| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,085,502 – 6,085,599 |
| Length | 97 |
| Max. P | 0.899330 |
| Location | 6,085,502 – 6,085,599 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6085502 97 + 20766785 C-CUGGAGUCACCCUCCCCCCCCCCACUCACCCAAACCUAUGGCAUUCAUUGAACAAUGCUAUAUAAUUACAUAAAAGUCAGCAGCUUGCUUGGCUUG .-..((((.....)))).....................(((((((((........)))))))))...........((((((((.....)).)))))). ( -19.20) >DroSec_CAF1 103230 81 + 1 C-CUGGAGCC--------CCCC--------CCCAAACCUAUGGCAUUCAUUGAACAAUGCUAUAUAAUUACAUAAAAGUCAGCAGCUUGCUUGGCUUG .-...(((((--------....--------........(((((((((........)))))))))................(((.....))).))))). ( -16.20) >DroEre_CAF1 106338 77 + 1 CCCCGGAAC---------------------CCCCAAACCAUGGCGUUCAUUGAACAAUGCUAUAUAAUUACAUAAAAGUCAGCAGCUUGCUUGGCUUG ....((...---------------------..)).....((((((((........))))))))............((((((((.....)).)))))). ( -15.00) >consensus C_CUGGAGCC________CCCC________CCCAAACCUAUGGCAUUCAUUGAACAAUGCUAUAUAAUUACAUAAAAGUCAGCAGCUUGCUUGGCUUG ......................................(((((((((........)))))))))...........((((((((.....)).)))))). (-14.29 = -14.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:04 2006