| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,076,365 – 6,076,458 |
| Length | 93 |
| Max. P | 0.906178 |
| Location | 6,076,365 – 6,076,458 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.59 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -16.12 |
| Energy contribution | -16.06 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6076365 93 - 20766785 GGUGGUGGGUGG-------ACAGAUGGCCGGCAAAACUUUUGCAGCGAAAAUAUAAAAAUGGAGCGCACGUCUGUGACAAAAACAAGA------GUGGAAAAAAAA ....((...((.-------(((((((....((((.....)))).(((....(((....)))...))).)))))))..))...))....------............ ( -18.30) >DroVir_CAF1 114551 96 - 1 GUUGGUGGUUCGCCCUCACACAGAUGGCCGGCAA-ACUUUUGCAGCGAAAAU--AAAAAUGGAGCGCACGUUUGUGACAAAAACAAAAAGCA--AAAGC-A--A-- ((((((.((..(........)..)).))))))..-.(((((((.(((...((--....))....)))...(((((.......)))))..)))--)))).-.--.-- ( -22.70) >DroPse_CAF1 90835 97 - 1 AGUGGUGGGGCG-CCCAUCACAGAUGGCCGGCAAAACUUUUGCAGCGAAAAUAUAAAAAUGGAGCGCACGUCUGUGACAAAAACAACAAGCA--GGGGA----G-- .((((((((...-))))))))...............(((((((.(((....(((....)))...)))..((.(((.......)))))..)))--)))).----.-- ( -24.80) >DroGri_CAF1 103639 88 - 1 -------AGGCGGCCUCUCACAGAUGGCCGGCAA-ACUUUUGCAGCGAAAAU--AAAAAUGGAGCGCACGUUUGUGACAAAAAAAAAA---A--AAAGC-A--AAA -------.(.(((((((.....)).))))).)..-...(((((.((......--.........))((((....))).)..........---.--...))-)--)). ( -20.26) >DroAna_CAF1 114528 101 - 1 --GGCUGGCUGG--GCAUCACAGAUGGCCGGCAAAACUUUUGCAGCGAAAAUAUAAAAAUGGAGCGCACGUCUGUGACAAAAACAACAAGCGCAAUGAAAGA-GAA --.(((((((((--.((((...)))).)))))....(....))))).................((((..((.(((.......)))))..)))).........-... ( -26.00) >DroPer_CAF1 90670 97 - 1 AGUGGUGGGGCG-CCCCACACAGAUGGCCGGCAAAACUUUUGCAGCGAAAAUAUAAAAAUGGAGCGCACGUCUGUGACAAAAACAACAAGCA--AGGGA----G-- .((.(((((...-.)))))(((((((....((((.....)))).(((....(((....)))...))).)))))))..............)).--.....----.-- ( -25.80) >consensus _GUGGUGGGGCG_CCCCUCACAGAUGGCCGGCAAAACUUUUGCAGCGAAAAUAUAAAAAUGGAGCGCACGUCUGUGACAAAAACAACAAGCA__AAGGA_A__A__ ..................((((((((((..((((.....)))).((.................)))).)))))))).............................. (-16.12 = -16.06 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:03 2006