| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,048,756 – 6,048,863 |
| Length | 107 |
| Max. P | 0.614578 |
| Location | 6,048,756 – 6,048,863 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -16.78 |
| Consensus MFE | -15.00 |
| Energy contribution | -14.92 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6048756 107 - 20766785 ----------ACAAAU-AUUAGAUGAGUUUUUCGCUAACAACGUUUCGUAAUGUAACAAAUUUUGAACGUAGUUUGAUAGUAGAUCUCAUCACAAGAUAAA-UUCUUUUUUAAAUUC-UU ----------......-....((((((...((..(((...(((((....)))))..((((((........)))))).)))..)).))))))..((((....-.))))..........-.. ( -17.30) >DroSim_CAF1 70153 97 - 1 ----------ACAAAA-UUUAGAUGAGUUUUUCGCUAACAACGUUUCGUAAAGUGA-AAAUUUUGAACGUAGUUUGAUAGUAGAUCUCAUCACAAGAAAG---UUUUUUG--------UA ----------......-....((((((...((..(((((.((((((...(((((..-..))))))))))).))....)))..)).))))))((((((...---..)))))--------). ( -20.90) >DroEre_CAF1 67884 100 - 1 ----------CUAAAA-UUUAGAUGAGUUUUUCGCUAACAACGUUUCGUAAAAUGA-AAAUUUUGAACGUAGUUUGAUAGUAGAUCUCAUCACAAGAUAAG--UAUUAUG-----U-UUA ----------......-....((((((...((..(((((.((((((...(((((..-..))))))))))).))....)))..)).))))))..........--.......-----.-... ( -18.60) >DroYak_CAF1 66696 98 - 1 ----------ACAAAA-UUUAGAUGAGUUUUUCGCUAACAACGUUUCUUAA-AUUA-ACAUUUUGAACGUAGUUUGAUAGUAGAUCUCAUCACAAGAUU-G--UA-CAUG-----UCCUA ----------((((..-((..((((((...((..(((((.((((((...((-((..-..)))).)))))).))....)))..)).))))))..))..))-)--).-....-----..... ( -16.00) >DroAna_CAF1 69930 108 - 1 GGUGCUAAGAAUAAAA-AUAAGUUGAGUUUUUCGCUAACAACGUUUCUUAAAAUCA-UAAUUUUGAACGUAGUUUGAUAGUAGAUCUCAAUACAAUCCU----CA-UAAA-----UCAUA ................-....((((((...((..(((((.((((...(((((((..-..))))))))))).))....)))..)).))))))........----..-....-----..... ( -13.40) >DroPer_CAF1 66415 92 - 1 ----------UUAUAUCUUCAGUUGAGUUUUUCGCUAACAACGUUUCGUAAAAUGA-AA--UUUGAACGUAGUUUGAUAGUAGAUCUCAACACAGUAUU-CU-CA-GG------------ ----------...........((((((...((..(((.....(((((((...))))-))--)(..(((...)))..))))..)).))))))........-..-..-..------------ ( -14.50) >consensus __________ACAAAA_UUUAGAUGAGUUUUUCGCUAACAACGUUUCGUAAAAUGA_AAAUUUUGAACGUAGUUUGAUAGUAGAUCUCAUCACAAGAUA____UA_UAUG_____U__UA .....................((((((...((..(((((.((((((...(((((.....))))))))))).))....)))..)).))))))............................. (-15.00 = -14.92 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:53 2006