| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,041,570 – 6,041,671 |
| Length | 101 |
| Max. P | 0.956010 |
| Location | 6,041,570 – 6,041,671 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.69 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -21.40 |
| Energy contribution | -20.52 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6041570 101 - 20766785 ---GGUGCGUGCCCAGGUGAGUAUGCUCCGCCCAACGGUAUCGGUUGGGCGAAGUGAAAUACAAGAAUGAAGUAAAUUUA-UUAUUUUAAGUUCA-UUUUUGUUUG ---((.((((((.(....).)))))).))(((((((.......)))))))..........(((((((((((.((((....-....))))..))))-)))))))... ( -34.40) >DroPse_CAF1 58954 101 - 1 ---GGUAUC-CCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUGCAAAAAUGAAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCGUUCA ---((....-..))......((.(((((((((((((.......)))))))))))))))((((((((((.......))))))))))..........-.......... ( -26.90) >DroGri_CAF1 69683 104 - 1 UUGCGUAAGUGGUCAGGUAAGUAUGCUUCGCCCGACGGUAUCGGUUGGGCGAAGUGCGC-AC-AAAAUGAAAUAAAUUUUGAAAUUUUAAGUUCAGUUUUUGUUUU (..(....)..)........((..((((((((((((.......))))))))))))..))-..-.....((((((((..(((((........)))))..)))))))) ( -33.80) >DroMoj_CAF1 74925 103 - 1 AUACGCUUGGGUCCAGGUAAGUAUGCUUCGCUUGACGGUAUCGGUUGAGCGAAGUGCCA-AG-AAAAUGAAGUAAAUUUUGAUAUUUUAAGUUCG-UUUUUGUUUC (((((((((....)))))..))))((((((((..((.......))..))))))))....-.(-((((((((.((((.........))))..))))-)))))..... ( -29.20) >DroAna_CAF1 62501 97 - 1 ---GGUGU---UUCAGGUGAGUAUGCUCCGCUCGACGGUAUCGGUUGGGCGGAGUGCCGCACAA-AAUGAAGUAAAUUUU-GUAUUUUAAGUUCA-UUUUUGUUUG ---(((..---(((....)))...((((((((((((.......)))))))))))))))(((.((-((((((.((((....-....))))..))))-)))))))... ( -30.60) >DroPer_CAF1 58698 101 - 1 ---GGUAUC-CCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUGCAAAAAUGAAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCGUUCA ---((....-..))......((.(((((((((((((.......)))))))))))))))((((((((((.......))))))))))..........-.......... ( -26.90) >consensus ___GGUAUG_GCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUACAAAAAUGAAAUAAAUUUU_GUAUUUUAAGUUCA_UUUUUGUUUA ........................((((((((((((.......))))))))))))............(((((((........)))))))................. (-21.40 = -20.52 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:49 2006