Locus 1605

Sequence ID 2R_DroMel_CAF1
Location 6,023,171 – 6,023,279
Length 108
Max. P 0.534364
window2688

overview

Window 8

Location 6,023,171 – 6,023,279
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 82.16
Mean single sequence MFE -27.27
Consensus MFE -20.91
Energy contribution -21.37
Covariance contribution 0.46
Combinations/Pair 1.14
Mean z-score -1.29
Structure conservation index 0.77
SVM decision value 0.00
SVM RNA-class probability 0.534364
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6023171 108 - 20766785
CAGGUCAAUGGUU--UGUUCCUAAUGA-------AAAUUGAAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAACUGUGGGCCAAGUCAUUGCCUCGAAUUAAAAG
.(((.(((((..(--((..((((((..-------..))))..((..(((((((((((((......)).)))))))......))))..))))..)))..))))))))........... ( -29.60)
>DroSec_CAF1 41532 108 - 1
CAGGUCAAUGGUU--GGUUCCUAAUGA-------AAACUGAAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAACUGUGGGCCAAGUCAUUGUCUCGAAUUAAAAG
(((((((((((((--((((........-------.))))..)))))))).(((((((((......)).)))))))..)))))......((((.(((....))).))))......... ( -26.20)
>DroSim_CAF1 41206 108 - 1
CAGGUCAAUGGUU--GGUUUCUAAUGA-------AAACUGAAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAACUGUGGGCCAAGUCAUUGCCUCGAAUUUAAAG
.(((.((((((.(--((((((......-------.....)))))))(((.(((((((((......)).)))))))...((..(....)..)).))).)))))))))........... ( -29.30)
>DroEre_CAF1 41634 117 - 1
CAGGUCAAUGGUUAUUUUUCCAAAAAAAAAAAGAAAACAUAAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAGCUGUGGGCCAAGUCAUUGCCACGAAUUAAAAG
((((((((((((((((((((............))))).)).)))))))).(((((((((......)).)))))))..)))))....(((((..(((....))))))))......... ( -27.60)
>DroYak_CAF1 41158 108 - 1
CAGGUCAGUGGUU--UGUUCCAAGGAA-------GAACAUAAACCAUUGCUACCGUUACGCCAUAUAAGACGGUACUACCUGCAGCUGUGGGCCAAAUCUUUGCCUCGAAUUAAAAG
(((((((((((((--(((((.......-------)))))..)))))))).(((((((...........)))))))..))))).......((((.........))))........... ( -27.00)
>DroAna_CAF1 43453 89 - 1
CAGGUCGAUGGCU--A-----------------------CCAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAACUGUGGGCCAAGUUUUUGCCUAAAAAU---UG
(((((((((((..--.-----------------------....)))))).(((((((((......)).)))))))..)))))......(((((.........))))).....---.. ( -23.90)
>consensus
CAGGUCAAUGGUU__UGUUCCUAAUGA_______AAACUGAAACCAUUGCUACCGUUACGCCAUAGUAGACGGUACUACCUGCAACUGUGGGCCAAGUCAUUGCCUCGAAUUAAAAG
(((((((((((((...(((................)))...)))))))).(((((((((......)).)))))))..))))).......((((.........))))........... (-20.91 = -21.37 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:39 2006