| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,999,913 – 6,000,020 |
| Length | 107 |
| Max. P | 0.582889 |
| Location | 5,999,913 – 6,000,020 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.85 |
| Mean single sequence MFE | -45.71 |
| Consensus MFE | -18.51 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5999913 107 + 20766785 CCGCGGAAGCUUCCGUCCAGGAACCAGGGCACUGUUGUCUAUAUUG----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCUAGCUGUGGAAAUGGAGGCCAGUUGCUGCA ..((((..((((((((((((((....(((((.(((.....))).))----------)))...))))))))......(..((((......))))..)....))))))......)))). ( -44.30) >DroVir_CAF1 19115 116 + 1 UCGUGGCAGCUUGCGUCCGGCGACCAGGCUGCUGGUAUCGAUGU-GCAAAUUGUGUGGCAAAUGCGGCACCAGAUGCUGCAGCGAGCGGGCUGUUGAAAUGGAGGCCAGUUGCUGCA ..(..((((((.((.((((.((((.((.(((((.((.....(((-(((..(.((((.((....)).)))).)..))).))))).))))).))))))...)))).)).))))))..). ( -53.70) >DroGri_CAF1 18567 116 + 1 ACGUGGCAGCUUGCGUCCAGCCAAAAGGGUGCUGGUGUCAAUGU-GUAAAUUCUGUGGCAAAUGCGGCACUAGAUGCUGCAGUGAGCGAGCCGUCGAUAUGGAUGCCAAUUGCUGCA ..(..((((...(((((((.......((.((((.((((((..((-....))....)))))..(((((((.....))))))).).))))..)).......)))))))...))))..). ( -40.04) >DroEre_CAF1 18173 107 + 1 ACGCGGCAGCUUUCGGCCCGGAACCAGGGCACUGUUGUCUAUGUUG----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCGGGCAGUGGAAAUGGAGGCCAGUUGCUGCA .(((.((((((((((..(((((((..(((((..((.....))..))----------)))..))))))).))))).))))).))).....((((..(...(((...))).)..)))). ( -47.60) >DroYak_CAF1 18183 107 + 1 GCGAGGAAGCUUCCGUCCAGGAACCAGGGCACUGUUGUCUAUGUUA----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCUAGCCGUGGAAAUGGAGGCCAGUUGCUGCA .......(((.(((((((((((....(((((....)))))(((...----------..))).))))))))).)).)))((((((((....((((....))))......)))))))). ( -39.90) >DroMoj_CAF1 20517 116 + 1 GCGGGGCAACUUGCGACCCGCUACGAGGCUGCUGGUGUCAAUGU-GCAGGUUCUGUGGCAGGUGCGGCACCAGGUGCUGCAGCGAACGAGCCGUCGAUAUGGAGGCCAAUUGCUGUA (((((....))))).(((.((((((((.((((..((....))..-)))).))).))))).)))(((((((...)))))))(((((..(.(((.((......))))))..)))))... ( -48.70) >consensus ACGCGGCAGCUUGCGUCCAGCAACCAGGGCACUGGUGUCUAUGU_G__________CGCAUGUGCGGCACGAGAUGCUGCAGCGAUCGAGCCGUGGAAAUGGAGGCCAGUUGCUGCA ..(((((((((..(.((((....(((.(((...........................((.......))......(((....))).....))).)))...)))).)..))))))))). (-18.51 = -19.48 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006