Locus 1600

Sequence ID 2R_DroMel_CAF1
Location 5,993,138 – 5,993,231
Length 93
Max. P 0.801641
window2683

overview

Window 3

Location 5,993,138 – 5,993,231
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -22.82
Consensus MFE -15.75
Energy contribution -15.67
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.28
Structure conservation index 0.69
SVM decision value 0.62
SVM RNA-class probability 0.801641
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5993138 93 - 20766785
CUUCACCAGGAAGUUUAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCCA-ACAAGUUU-GGUAAUUAGUGUAAAAGG----CCAUA
.((((((.(((.......(....)((((...........)))).))).))))))((((((((-(.....))-))).............))----))... ( -24.41)
>DroSec_CAF1 11529 92 - 1
CUUCACCAGGAAGUUGAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA-ACAAAUUU-GGUAAUUAGUGUAA-AGG----CCAUA
.((((((.(((....((.....))((((...........)))).))).))))))((((....-((.((((.-...)))).))....-.))----))... ( -25.70)
>DroSim_CAF1 12007 92 - 1
CUUCACCAGGAAGUUGAUGAACUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA-ACAAGUUU-GGUAAUUAGUGUAA-AGG----CCAUA
.((((((.(((((((....)))).((((...........)))).))).))))))((((....-((.((((.-...)))).))....-.))----))... ( -26.30)
>DroEre_CAF1 11544 88 - 1
CUUCACCAGAAAGUUGAUGAACUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCAAAACAAGUGU-GAUAAUUA----------UUAUCCAUA
((((((((((.((((....)))).((((...........)))).))).)))))))............(((.-((((....----------.))))))). ( -23.90)
>DroMoj_CAF1 12430 84 - 1
CUUCACCAGGAAGUUUAUAAAUUCCGGCGUAAAGCGAAAGCCCAUUUGUGUGAAUGCUGUAA---AAGAAA-CAUAUUAC-------AU----GACAUG
..((((((((((.........))))........((....)).....)).))))(((((((((---.(....-..).))))-------).----).))). ( -14.00)
>DroPer_CAF1 9626 88 - 1
CUUCACCAGAAAGUUGAUGAAUUCCGGCGAAAACCGAAAGCCCAUCUGAGUGAAGGCUGUGG-GCAAGGAAAAGCCAUUA----------GUAACCAUC
((((((((((..((((........))))......(....)....)))).))))))((((..(-((........)))..))----------))....... ( -22.60)
>consensus
CUUCACCAGGAAGUUGAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA_ACAAGUUU_GGUAAUUA_______AG_____CCAUA
((((((((((.((((....)))).((((...........)))).)))).))))))............................................ (-15.75 = -15.67 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:34 2006