Locus 1595

Sequence ID 2R_DroMel_CAF1
Location 5,970,276 – 5,970,380
Length 104
Max. P 0.747670
window2677

overview

Window 7

Location 5,970,276 – 5,970,380
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.15
Mean single sequence MFE -18.30
Consensus MFE -9.32
Energy contribution -8.97
Covariance contribution -0.36
Combinations/Pair 1.36
Mean z-score -1.73
Structure conservation index 0.51
SVM decision value 0.47
SVM RNA-class probability 0.747670
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5970276 104 - 20766785
---CCAAUAAAUUAAAACUAAAACUGAAACUCAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU-UGGCAAACCGAUAG-----
---..............((...((((....(((((((((....-.)))))))))....(((------......)))))))..))((((((........))-))))..........----- ( -21.80)
>DroSec_CAF1 12636 88 - 1
AGUCAAAUAAAUUAAAACUUAAACU------UAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAA--------------ACUGAUAG-----
.........................------...(((((.((.-(((((.(((......))------).)))))....))....)))))....--------------........----- ( -14.90)
>DroSim_CAF1 13001 88 - 1
AGUCAAAUAAAUUAAAACUAAAAUU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAA--------------ACUGAUAG-----
.((((......((((........))------)).(((((.((.-(((((.(((......))------).)))))....))....)))))....--------------..))))..----- ( -15.60)
>DroEre_CAF1 12900 106 - 1
-GCCAAAUAAAUUAAAACUAAAACU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGGGAAAAACGCUUUUAGCCAACUAAUAAACUAA
-(((.....................------.....(....).-(((((.(((......))------).))))))))(((...(((..(((.......)))..))).))).......... ( -19.10)
>DroYak_CAF1 13574 100 - 1
-GCCAAAUAAAUUAAAACUAAAACU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU-UGGCCAACUAAUAU-----
-(((.....................------.....(....).-(((((.(((......))------).))))))))(((...(((((((........))-))))).))).....----- ( -23.30)
>DroAna_CAF1 12707 94 - 1
---CGAAUAAAUUAAAACCAAAACU------AAAUCGCCAGCAAAGUUGAUUGAAACUCUCUAGAUUGAAAUCUGGCGUGGCGGGGCAAGAAAAACAAAU-CGG----------------
---..............((......------...((((((((..((((......))))...(((((....))))))).)))))).....((........)-)))---------------- ( -15.10)
>consensus
_G_CAAAUAAAUUAAAACUAAAACU______GAAUCGGCAACA_AGUUGAUUGAAAACCCA______ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU_UGG___ACUGAUAG_____
..................................(((((......(((.......)))..............(((......))))))))............................... ( -9.32 =  -8.97 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:28 2006