| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,962,245 – 5,962,355 |
| Length | 110 |
| Max. P | 0.516564 |
| Location | 5,962,245 – 5,962,355 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -17.82 |
| Energy contribution | -18.13 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5962245 110 - 20766785 ------CUCUGUUUC--CUUUCAGACACACGUUAUCUUUCCCCAUUUGGUUGUUUCAAACGAUCCCGCAUAUUUCCCAGAACCCAAGCGUUUUCUGCCCGAGCGCUGGCUGAAACAGU-- ------..(((((((--..(((.(((....)))..............((((((.....))))))..............))).(((.((((((.......)))))))))..))))))).-- ( -20.30) >DroVir_CAF1 15153 108 - 1 CAC---------AUG-CAAUGCAGACGCACGUCAUCUUCCCACAUCUGGUUGUCUCGAAUGAUCCAACAUAUUUUCCCGAGCCGAAACGUUUCCUGCCCGAACGUUGGCUCAAACAGG-- ...---------.((-(...)))(((....)))............(((((((..((....))..))))..........((((((..((((((.......))))))))))))...))).-- ( -24.30) >DroPse_CAF1 1911 112 - 1 ------CCCUUCCCC--CUUUCAGACGCACGUCAUCUUCCCACAUCUGGUGGUGUCCAACGAUCCCGCAUAUUUCCCAGAGCCCAAGCGCUUCCUGCCCGAGCGUUGGCUCAAACAAACA ------.........--......(((....)))...............((((..((....))..))))..........(((((..(((((((.......))))))))))))......... ( -26.30) >DroGri_CAF1 13558 116 - 1 -ACCCAAUGUAUUCC-AAAAACAGACGCACGUCAUCUUCCCACACUUGGUUGUCUCGAAUGAUCCAACAUAUUUUCCAGAGCCCAAACGAUUUCUGCCCGAACGUUGGCUCAAACAGG-- -..............-.......(((....)))...........((((((((..((....))..))))..........(((((..((((..(((.....))))))))))))...))))-- ( -20.70) >DroAna_CAF1 5427 114 - 1 ------UUCUGCUUCUGUUUUCAGACGCACGUUAUCUUCCCACACCUGGUGGUUUCAAACGAUCCCGCAUAUUUCCCAGAACCCAAACGCUUUCUGCCCGAACGCUGGCUGAAGCAGACA ------.((((((((.((...(((.((..((.................((((..((....))..))))........(((((..(....)..)))))..))..))))))).)))))))).. ( -27.60) >DroPer_CAF1 1916 112 - 1 ------CCCUUCCAC--CUUUCAGACGCACGUCAUCUUCCCACAUCUGGUGGUGUCCAACGAUCCCGCAUAUUUCCCAGAGCCCAAGCGCUUCCUGCCCGAGCGUUGGCUCAAACAAGCA ------.........--......(((....)))...............((((..((....))..))))..........(((((..(((((((.......))))))))))))......... ( -26.30) >consensus ______CUCUGCUUC__CUUUCAGACGCACGUCAUCUUCCCACAUCUGGUGGUCUCAAACGAUCCCGCAUAUUUCCCAGAGCCCAAACGCUUCCUGCCCGAACGUUGGCUCAAACAGG__ .......................(((....)))............(((((((..((....))..))))..........(((((..(((((((.......))))))))))))...)))... (-17.82 = -18.13 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006