Locus 1591

Sequence ID	2R_DroMel_CAF1
Location	5,959,588 – 5,959,681
Length	93
Max. P	0.549282

overview

Window 2

Location	5,959,588 – 5,959,681
Length	93
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	83.70
Mean single sequence MFE	-16.61
Consensus MFE	-12.73
Energy contribution	-12.65
Covariance contribution	-0.08
Combinations/Pair	1.14
Mean z-score	-1.54
Structure conservation index	0.77
SVM decision value	0.03
SVM RNA-class probability	0.549282
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5959588 93 + 20766785
UAUACACAAUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCUGCCAUUUAUG-CCCCACCUCCUUGCGUUUUUC
..........(((.(((.(....(((((((((((........)))))))......................)-)))..).)))..)))...... ( -14.74)
>DroSec_CAF1 2203 86 + 1
UAUA--AAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUACCAUUUAUUCUCGGUC-----CC-CCUCCACUCCUUGCGUUUUUC
...(--(((.(((.(((((...((((..((((((........))))))(((..........))).-----.)-))).)).)))..))).)))). ( -14.50)
>DroSim_CAF1 2298 89 + 1
UAUA--CAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCGGUCCGC--CC-CCUCCACUCCUUGCGUUUUUC
....--....(((.(((((....(((((((((((........)))))))((..........))...))--))-....)).)))..)))...... ( -18.00)
>DroEre_CAF1 2338 85 + 1
U--A--CAGUUGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUACUUGGCC-----CCACCCACACCCCUUGCGUUUUUC
.--.--........(((.((((((((..((((((........))))))((((........)))).-----...........))))).))).))) ( -16.70)
>DroYak_CAF1 2233 79 + 1
U--A--CAAUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUACUUGGCC-----CCG------CCCCUUGCGUUUUUC
.--.--....(((.((....)).((((.((((((........))))))((((........)))).-----..)------)))...)))...... ( -19.10)
>consensus
UAUA__CAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCGGCC_____CC_CCCCCACUCCUUGCGUUUUUC
...........(((((........(((.((((((........)))))))))........))))).............................. (-12.73 = -12.65 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:23 2006