Locus 1586

Sequence ID 2R_DroMel_CAF1
Location 5,950,040 – 5,950,134
Length 94
Max. P 0.966408
window2661

overview

Window 1

Location 5,950,040 – 5,950,134
Length 94
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.46
Mean single sequence MFE -29.62
Consensus MFE -22.56
Energy contribution -23.16
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.82
Structure conservation index 0.76
SVM decision value 1.59
SVM RNA-class probability 0.966408
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5950040 94 + 20766785
AGGCUGAAGCAGACCCAC--ACACA--CGCAUACACUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUGAAGCUGA----AAAAAGCUG
.((((...(((.((((((--((((.--(((((......)))))))))))...((.((((....)))).))).)))...)))..))))..----......... ( -31.10)
>DroSec_CAF1 5018 94 + 1
AGGCUGAAGCAGACCCAC--ACACA--CGCAUACACUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUGAAGCUGA----AAAAAGCUG
.((((...(((.((((((--((((.--(((((......)))))))))))...((.((((....)))).))).)))...)))..))))..----......... ( -31.10)
>DroSim_CAF1 5424 94 + 1
AGGCUGAAGCAGACCCAC--ACACA--CGCAUACACUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUGAAGCUGA----AAAAAGCUG
.((((...(((.((((((--((((.--(((((......)))))))))))...((.((((....)))).))).)))...)))..))))..----......... ( -31.10)
>DroEre_CAF1 4701 97 + 1
AGGCUGAGGCAGAGGCACACACACA--CACAUACACUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUUAAGCUGA---AAAAAAGCGG
.((((..((((...((.((((((((--(.(.(((....))).)))))))...((.((((....)))).)))))))...)))).))))..---.......... ( -26.20)
>DroYak_CAF1 4872 102 + 1
AGGCUGAAGCAGAGACACACACACAAACGCAUACCCUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUGAAGCUGAGAAAAAAAAGCAG
.((((...(((...((.((((((((..(((((......))))).)))))...((.((((....)))).)))))))...)))..))))............... ( -28.60)
>consensus
AGGCUGAAGCAGACCCAC__ACACA__CGCAUACACUAGUGCGGUGUGUAUACGACUGGAAAACUAGGCGGUGGUAAAUGUGAAGCUGA____AAAAAGCUG
.((((...(((...((((..((((...(((((......)))))..))))...((.((((....)))).))))))....)))..))))............... (-22.56 = -23.16 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:13 2006