| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,934,107 – 5,934,215 |
| Length | 108 |
| Max. P | 0.528511 |
| Location | 5,934,107 – 5,934,215 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -22.93 |
| Energy contribution | -22.61 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5934107 108 - 20766785 AGCACAGGUGGCUCCCCAGAGUCUUCUGAACCCACAUUGU------------UUAGGUCUGGACUCUGAUUGAUUUGGUAUCCUAUUACCAAUUGGGCACUUUGGCAUAAUACCUCCAUC .((..(((((...((((((((((((((((((.......))------------)))))...))))))))......((((((......))))))..))))))))..)).............. ( -32.20) >DroSec_CAF1 76561 108 - 1 AGCACAGGUGGCUCCCCAGAGUCUUCUGCGCCCACAUUGU------------UUAGGUCUGGACUCCUCUUGAUUUGGUAUCCUAUUACCAAUUGGGCACUUUGGCAUAAUACCUCCAUC .((.((((.(((((....))))).)))).(((((.((((.------------.((((.(..((.((.....))))..)...))))....)))))))))......)).............. ( -29.20) >DroEre_CAF1 61928 120 - 1 AGCACGGGUGGCUCACCAGAGUCUUCUGAGCAGACAUUGAAACAUUGGUGGGACAGGUCCGGACGCCGCUUCAUUUGGUAUCCCGCCACCAAUUUGGCACUUUGGCAUAACGCCUCCAUC .((...((((((.((((((.((.(((............))))).))))))(((....)))(((..(((.......)))..))).))))))......)).....(((.....)))...... ( -37.10) >consensus AGCACAGGUGGCUCCCCAGAGUCUUCUGAGCCCACAUUGU____________UUAGGUCUGGACUCCGCUUGAUUUGGUAUCCUAUUACCAAUUGGGCACUUUGGCAUAAUACCUCCAUC .....(((((.....(((((((.......(((((.....................((........)).......((((((......)))))).)))))))))))).....)))))..... (-22.93 = -22.61 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:55 2006