Locus 1575

Sequence ID 2R_DroMel_CAF1
Location 5,932,613 – 5,932,733
Length 120
Max. P 0.713200
window2639

overview

Window 9

Location 5,932,613 – 5,932,733
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -37.76
Consensus MFE -35.33
Energy contribution -35.44
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.94
SVM decision value 0.38
SVM RNA-class probability 0.713200
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5932613 120 + 20766785
CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGCUGCCUCGGUUCCGAUAUUUGUAGGCUCCAAUCAAACCUGCGGCCACGAAUCCGGCAAUACCCACCAGCAUA
..((((((((..........)))).))))......(((((((....(((((..(((....))).((((((.((((.((........)).)))))))))).))))).....)))))))... ( -38.30)
>DroSec_CAF1 75059 120 + 1
CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACGAAUCCGGCAAUACCAACCAGCAUG
..((((((((..........)))).))))......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... ( -37.34)
>DroYak_CAF1 77726 120 + 1
CCCUGGGCAGCCACACGCAGCUGCAUCAAAAAGACGCUGGUACUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACAAAUCCGGCAAUACCCACCAGCAUA
...((((((((........))))).))).......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... ( -37.64)
>consensus
CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACGAAUCCGGCAAUACCCACCAGCAUA
..((((((((..........)))).))))......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... (-35.33 = -35.44 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:52 2006