| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,928,197 – 5,928,314 |
| Length | 117 |
| Max. P | 0.999582 |
| Location | 5,928,197 – 5,928,314 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.06 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -24.16 |
| Energy contribution | -24.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.93 |
| SVM decision value | 3.75 |
| SVM RNA-class probability | 0.999582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5928197 117 - 20766785 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AACAGGUACGAAAACAUACUCCCUCGGUGCCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACUAGAAA-- ((((((..(((.....))).(((((...(((((......-....)))))...)))))........))))))...........((((((......))))))..................-- ( -22.90) >DroSec_CAF1 70133 118 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AA-AGGUACGAAAACAUACUCCCUCGACGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAAAAGC (((...((.(((((......(((((...(((((......-..-.)))))...)))))..((....)).))))).))......((((((......)))))).)))................ ( -26.50) >DroSim_CAF1 66103 118 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AA-AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAACAAA (((...((.(((((......(((((...(((((......-..-.)))))...)))))...((...)).))))).))......((((((......)))))).)))................ ( -26.80) >DroEre_CAF1 60950 116 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAAAAA-AGGUACAAAAACAUAUUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAAAAAA-CA-- (((...((.(((((......(((((...(((((.........-.)))))...)))))...((...)).))))).))......((((((......)))))).)))...........-..-- ( -25.60) >DroYak_CAF1 64082 114 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAA--AA-AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGGAUGUCGCCAAAAUAUAAAA-UA-- ((((.(((((((((......(((((...(((((.....--..-.)))))...)))))...((...)).)))))((((((.....))))))..)))).))))..............-..-- ( -28.40) >consensus GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA_AA_AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAAAA__ (((...((.(((((......(((((...(((((...........)))))...))))).(......)..))))).))......((((((......)))))).)))................ (-24.16 = -24.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:50 2006