Locus 1572

Sequence ID 2R_DroMel_CAF1
Location 5,927,636 – 5,927,744
Length 108
Max. P 0.699175
window2636

overview

Window 6

Location 5,927,636 – 5,927,744
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -21.48
Consensus MFE -17.12
Energy contribution -17.80
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.56
Structure conservation index 0.80
SVM decision value 0.35
SVM RNA-class probability 0.699175
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5927636 108 - 20766785
AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA
........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00)
>DroSec_CAF1 69539 108 - 1
AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA
........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00)
>DroSim_CAF1 65497 108 - 1
AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA
........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00)
>DroEre_CAF1 60338 100 - 1
AUUAUUCAAAGCUUCAAAAGGUGCCACAGU--------AAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAAUCGUUAGACAGAUCAGACCGCCAUAAGCAUUAA
..........((((.....(((((......--------.....)).......((((..((((((((.........))))).)))...))))))).....))))..... ( -14.20)
>DroYak_CAF1 63463 107 - 1
AUU-UUUAAAGGUUCAUAAGAUGGCACAAAAAAGAGUAAAAUCGCAUUUUAAUUGAAAGUCAGCGGUACCCAAACCCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA
...-....((((((......(((((........((......)).........((((..((((((((.........))))).)))...))))...))))).)))))).. ( -21.20)
>consensus
AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA
........((((((......(((((........((......)).........((((..((((((((.........))))).)))...))))...))))).)))))).. (-17.12 = -17.80 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:49 2006