| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,918,745 – 5,918,856 |
| Length | 111 |
| Max. P | 0.618086 |
| Location | 5,918,745 – 5,918,856 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.77 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -22.86 |
| Energy contribution | -22.70 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5918745 111 - 20766785 AUGGCGGAAAGUCGAGCGCCAUUCGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAAAAACAUUUGUA-AUUCGUGUGG---UGUGCUGU--GCAAAUUGCUUG ..(((((...((((.(((((((.((...((.(((((((.(((..(((((....)))))...))).......))))))).))-...)).))))---)))..)).--))...))))).. ( -23.80) >DroSec_CAF1 60730 114 - 1 AUGGCGGAAAGUCGAGCGCCAUUCGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAA-AACAUUUGCAAAUUCGGGUGGUGAUGUGCUGU--GCAAAUUGCUUG ..(((.....)))((((((((((((...((.(((((((.(((..(((((....)))))...)))......-))))))).))....))))))))(((.(((...--))).))))))). ( -28.70) >DroSim_CAF1 53997 114 - 1 AUGGCGGAAAGUCGAGCGCCAUUCGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAA-AACAUUUGCAAAUUCGGGUGGUGGUGUGCUGU--GCAAAUAGCUUG .((((.....))))(.(((((((((...((.(((((((.(((..(((((....)))))...)))......-))))))).))....))))))))).)..(((((--....)))))... ( -31.10) >DroEre_CAF1 52515 112 - 1 AUGGCGGAAAGUCGAGCGCCGUUCGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAA-AACAUUUGCA-AUUCGGGUGG---UGUGCUGCCAGCAAAUUGCUUG .((((((........((((((..((...((.(((((((.(((..(((((....)))))...)))......-))))))).))-...))..)))---))).))))))((.....))... ( -34.20) >DroYak_CAF1 53579 108 - 1 AUGGCGGAAAGUCGAGCGCCGUUUGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAA-AACAUUUGCA-AUUCGGGUGG---UG--CUGU--GCAAAUUGCUUG ..(((((...((..(((((((..((...((.(((((((.(((..(((((....)))))...)))......-))))))).))-...))..)))---))--))..--))...))))).. ( -28.80) >consensus AUGGCGGAAAGUCGAGCGCCAUUCGUUAUGGAAAUGUUGUGGAAGUAUAAAAUUGUGCGUAUCAAAUAAA_AACAUUUGCA_AUUCGGGUGG___UGUGCUGU__GCAAAUUGCUUG ..(((.....)))((((.(((..((...((.(((((((.(((..(((((....)))))...))).......))))))).))....))..))).....(((.....)))....)))). (-22.86 = -22.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:43 2006