| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,912,799 – 5,912,911 |
| Length | 112 |
| Max. P | 0.594898 |
| Location | 5,912,799 – 5,912,911 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.93 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -20.35 |
| Energy contribution | -21.54 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5912799 112 - 20766785 GCA-----UUCACACACAUGAAUAUGUGUACCUCCAU---CGGGCCUAUAAAAGUGCUACCAAAAUAGCCGUGGAAAGUGAAAGCAAACAGUUGGCCAGCCAGCAAAAGUGUUCUACAGU ((.-----(((((((((((....))))))...((((.---(((..((((...............)))))))))))..))))).)).....(((((....)))))................ ( -28.46) >DroSec_CAF1 54788 114 - 1 GCUUAGACUUCACACACAUGAAU------ACCUCCAAUGGCGAGGCUAUAAAAGUGCUACCAAAAUAGCCGUGGAAAGUGAAAGCAAACAGUUGGUCAGCCAGCAAAAGUGUUCUACAGU ((((..((((..(((........------.((......))...((((((...............)))))))))..))))..)))).....(((((....)))))................ ( -27.66) >DroSim_CAF1 47998 115 - 1 GCA-----UUCACACACAUGAAUAUGUGUACCUCCAAUGGCGAGGCUAUAAAAGUGCUACCAAAAUAGCCGUGGAAAGUGAAAGCAAACAGUUGGUCAGCCAGCAAAAGUGUUCUACAGU ((.-----(((((((((((....))))))...((((.((((..(((.........))).........))))))))..))))).)).....(((((....)))))................ ( -30.50) >DroEre_CAF1 46883 113 - 1 GCA-----UUCCCACACAUGAGUAUGUGUUCCUCCAUCA--GAGGCUAUAAAAGUGUUACCAAAAUAGCCGGGGAAAGUAAAAGCAAACAGUUGGCCAGCCAGCAAAAGUGUUCUACAGU ...-----(((((((((((....))))))..........--..((((((...............)))))).))))).(((..((((....(((((....))))).....)))).)))... ( -28.06) >consensus GCA_____UUCACACACAUGAAUAUGUGUACCUCCAAUG_CGAGGCUAUAAAAGUGCUACCAAAAUAGCCGUGGAAAGUGAAAGCAAACAGUUGGCCAGCCAGCAAAAGUGUUCUACAGU ........(((((((((((....))))))..............((((((...............)))))))))))..(((..((((....(((((....))))).....)))).)))... (-20.35 = -21.54 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:40 2006