| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,420,844 – 1,420,963 |
| Length | 119 |
| Max. P | 0.960134 |
| Location | 1,420,844 – 1,420,963 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.49 |
| Mean single sequence MFE | -34.58 |
| Consensus MFE | -29.98 |
| Energy contribution | -29.90 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1420844 119 + 20766785 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUC -......((((.((((((((......((((.......))))..))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -35.00) >DroSec_CAF1 39275 119 + 1 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUCGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU -......((((.((((((((.((...((((.......))))))))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -34.30) >DroSim_CAF1 44329 119 + 1 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU -......((((.((((((((......((((.......))))..))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -33.40) >DroEre_CAF1 37643 120 + 1 AAAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUGGGCACAGGCAGCGGCACCCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUCCUGGCGGGCAGCUU .......(((((((.(((((((....((((.......))))))))).((((.(((((((.............))).........(((((.....)))))..)))))))))).))).)))) ( -37.92) >DroYak_CAF1 38668 120 + 1 AAAUCACAAGCGCUGGUGCUAGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACGAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUUCUGGCGGGCAGCUU .......(((((((.(((((((....((((.......))))))))))).)))..((....))..........(((.........(((((.....)))))..(((.....))).))))))) ( -32.30) >consensus _AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU .......((((.((((((((......((((.......))))..))))).(((((((....)....((((((((((.(...........)))))).)))))..))))))..)))...)))) (-29.98 = -29.90 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:19 2006