Locus 1556

Sequence ID 2R_DroMel_CAF1
Location 5,893,736 – 5,893,826
Length 90
Max. P 0.974084
window2613

overview

Window 3

Location 5,893,736 – 5,893,826
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 90.44
Mean single sequence MFE -30.62
Consensus MFE -24.74
Energy contribution -26.38
Covariance contribution 1.64
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.81
SVM decision value 1.72
SVM RNA-class probability 0.974084
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5893736 90 - 20766785
AUUGUGGGUCACACUGUUAGUCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUCCAU
...((((((.((((((((((((((-....).(((((..(((((((.......)))))))...)))))))))))))))...))).)).)))) ( -34.40)
>DroSec_CAF1 29989 90 - 1
AUUGUGGGUCGCACUGUUAGCCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCUGGCUAACAGAGAUGUUACUGCGU
...(..(..(((.((((((((((.-....)((((((..(((((((.......)))))))...))))))))))))))).).))...)..).. ( -35.40)
>DroSim_CAF1 28750 90 - 1
AUUGUGGGUCGCACUGUUAGCCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUGCGU
...(..(..(((.(((((((((((-....).(((((..(((((((.......)))))))...))))))))))))))).).))...)..).. ( -35.30)
>DroEre_CAF1 28051 86 - 1
AUUGUGGGUCGCACUGUUAACCGGCUUAACAGAGGAGCUUUGAGCUUUCCUCGCUCGGAAAAUCCUCC-----ACAGAGAUGUUACGCGGU
.((((((......(((((((.....)))))))((((..(((((((.......)))))))...))))))-----)))).............. ( -25.20)
>DroYak_CAF1 28088 86 - 1
AUUGUGGGUCGCACUGUUAGCGAG-UUUACAGAGGAGCUUUGAGCUUUCCCCGUUCGGAAAAUCCUCC----AACAGAGAUGUUACUCCGU
..((((((((((.......)))).-))))))(((((..(((((((.......)))))))...))))).----.((.(((......))).)) ( -22.80)
>consensus
AUUGUGGGUCGCACUGUUAGCCGG_UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUCCGU
...(((((((...((((((((((........(((((..(((((((.......)))))))...))))))))))))))).))).))))..... (-24.74 = -26.38 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:26 2006