Locus 1555

Sequence ID 2R_DroMel_CAF1
Location 5,893,259 – 5,893,377
Length 118
Max. P 0.993793
window2612

overview

Window 2

Location 5,893,259 – 5,893,377
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.88
Mean single sequence MFE -20.81
Consensus MFE -19.12
Energy contribution -19.28
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.92
SVM decision value 2.43
SVM RNA-class probability 0.993793
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5893259 118 - 20766785
UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
.........(((((...........--.(((((........)))))(......)))((((((((........))))))))...............)))...................... ( -22.10)
>DroSec_CAF1 29516 118 - 1
UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGACCGUGUUAUUUACCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
.........(((.............--.(((((........))))).......((.(.((((((........)))))))))..............)))...................... ( -18.40)
>DroSim_CAF1 28277 118 - 1
UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
.........(((((...........--.(((((........)))))(......)))((((((((........))))))))...............)))...................... ( -22.10)
>DroEre_CAF1 27591 120 - 1
UUUAAUGAAGUCGUAUAAAUAAAAAAGCGCUGCCGUAAAUCGUAGCCAAACUAGGCGGCUCUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
.........(((((..((((((...((.((((((...................)))))).)).))))))...))(((.....)))..........)))...................... ( -19.41)
>DroYak_CAF1 27615 118 - 1
UUUAAAAAAGUCGCUUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCUGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
........(((((((((........--.(((((........))))).....))))))))).((((((((((...(((.....)))...((.....)).))))))))))............ ( -22.04)
>consensus
UUUAAUUAAGUCGCAUAAAUAAAAA__CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU
.........(((................(((((........)))))........(.((((((((........)))))))))..............)))...................... (-19.12 = -19.28 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:25 2006