| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,888,257 – 5,888,365 |
| Length | 108 |
| Max. P | 0.517391 |
| Location | 5,888,257 – 5,888,365 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.24 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -19.67 |
| Energy contribution | -19.23 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5888257 108 - 20766785 AAUAACAUAACCGUGAUUUUCAAUCACAUAAACUUCAUGACUAUUAAACAACAGAUGGAUCCUGACAUUCUAUCGAAGU-----------ACCUGGGUUGUUAAAAGCCAGGAACUAAU ............(((((.....)))))....(((((.((.........))...((((((.........)))))))))))-----------.(((((.((.....)).)))))....... ( -23.10) >DroSec_CAF1 24341 119 - 1 AGUAACAUAAUCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUAUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ..........((.((((((((((((.((((.....))))............((((((.....(((.......)))....(((....))))))))))))))...))))))).))...... ( -25.00) >DroSim_CAF1 22985 119 - 1 AGUAACAUAACCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUGUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ..........((.((((((((((((.((((.....))))............((((((.....((((.....))))....(((....))))))))))))))...)))))))))....... ( -28.40) >consensus AGUAACAUAACCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUAUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ............(((((.....)))))..(((((((.((.....)).......(((((((......)))).))))))))))..........(((((.((.....)).)))))....... (-19.67 = -19.23 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006