Locus 1548

Sequence ID 2R_DroMel_CAF1
Location 5,863,954 – 5,864,059
Length 105
Max. P 0.902555
window2604

overview

Window 4

Location 5,863,954 – 5,864,059
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 73.95
Mean single sequence MFE -20.05
Consensus MFE -11.94
Energy contribution -11.72
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.60
SVM decision value 1.03
SVM RNA-class probability 0.902555
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5863954 105 - 20766785
ACUUAUUCAUUACCGUAUCAAAUAAGUUGGCUUUUCUAGUAAAGUCAGCUCAUAACGUAUUCGUUUUGAACUAUUUAGGUCGCUCGAACACCUAAAAUUAAAGUU
((((.((((..((.((((...((.((((((((((......)))))))))).))...))))..))..))))...(((((((.(......))))))))....)))). ( -21.10)
>DroSim_CAF1 16538 101 - 1
AAG--UUGAUA--GGAAUCAAAUAAGUUGGCUUUUCUGGUAAAGUCAACUUUUAACAUAUUCGUUUUGAGCUAUUUAGGCCGUAUUAACAACUAAAAUUAAAGUA
..(--((((((--.(..(((((.(((((((((((......))))))))))).............)))))(((.....)))).)))))))................ ( -21.44)
>DroYak_CAF1 17854 91 - 1
--------------AUAUCUAACUAGUUGGCUUUUCACGUAAAGUCAGCUUUUUACAUAUUCGUUGCGAACUAUUUAGGCCGCUCUAACAGCUAAAAUUAAACUA
--------------((((.(((..((((((((((......))))))))))..))).))))..((((((..((....))..)))...)))................ ( -17.60)
>consensus
A____UU_AU____GUAUCAAAUAAGUUGGCUUUUCUAGUAAAGUCAGCUUUUAACAUAUUCGUUUUGAACUAUUUAGGCCGCUCUAACAACUAAAAUUAAAGUA
........................((((((((((......)))))))))).......................(((((.............)))))......... (-11.94 = -11.72 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:17 2006