Locus 1543

Sequence ID 2R_DroMel_CAF1
Location 5,837,114 – 5,837,234
Length 120
Max. P 0.667155
window2598

overview

Window 8

Location 5,837,114 – 5,837,234
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.66
Mean single sequence MFE -44.95
Consensus MFE -36.99
Energy contribution -37.22
Covariance contribution 0.22
Combinations/Pair 1.16
Mean z-score -1.76
Structure conservation index 0.82
SVM decision value 0.28
SVM RNA-class probability 0.667155
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5837114 120 - 20766785
GCAGAUGAACAUGAACAUGGCCAACACCGCCGUCGGGGCUGGAUCGCGUCGAGGAUCCGGCAUUGCCGGAUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACCUUGGCCGGGUAUGGAUC
.........((((....(((((((..(((....)))(((((((.(((.((...((((((((...))))))))........(((....))))))))))))).)))))))))..)))).... ( -43.80)
>DroPse_CAF1 35589 108 - 1
------------AAACAUGUCCAACACCGCCGUCGGGGCUGGGUCGCGUCGCGGCUCCGGCAUCGCCGGUUUGAACCCAAUGCAAAUGCAGAGCGUUCAGACUUUGGCCGGGUAUGGAUC
------------......(((((((.(((..((((((((((.(......).))))))))))...((((((((((((.(..(((....)))..).)))))))))..)))))))).))))). ( -48.30)
>DroGri_CAF1 49479 108 - 1
------------CAGUAUGCCCAACACCGCCGUCGGAGCUGGUUCGCGUCGAGGCUCCGGCAUCGCCGGUUUGAACCCAAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC
------------...(((((((.........(((((((((...(((...))))))))))))...(((.((((((((.(..(((....)))..).))))))))...))).))))))).... ( -45.00)
>DroWil_CAF1 45372 108 - 1
CC------------AAAUGACCAAUACCGCCGUCGGAGCUGGUUCGCGACGUGGUUCCGGCAUUGCCGGUUUGAAUCCCAUGCAAAUGCAGAGUGUUCAAACAUUGGCCGGGUAUGGAUC
..------------......(((.((((...(((((((((((((...))).))))))))))...(((.(((((((..(..(((....)))..)..)))))))...)))..)))))))... ( -39.60)
>DroMoj_CAF1 52507 108 - 1
------------AAAUAUGAGCAACACCGCCGUCGGAGCUGGUUCGCGACGCGGCUCCGGCAUCGCCGGUUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC
------------..............((((((((((((((((((...))).))))))))))...(((.((((((((.(..(((....)))..).))))))))...)))..)))..))... ( -42.80)
>DroAna_CAF1 32227 120 - 1
GCAGAUGAACAUGAAUAUGGCCAAUACCGCCGUCGGGGCUGGAUCGCGACGCGGUUCCGGCAUCGCCGGCUUGAACCCGAUGCAAAUGCAGAGUGUUCAGACAUUGGCCGGGUAUGGAUC
.........((((....((((((((...((((.((..((((((((((...)))).))))))..)).))))((((((.(..(((....)))..).))))))..))))))))..)))).... ( -50.20)
>consensus
____________AAAUAUGACCAACACCGCCGUCGGAGCUGGUUCGCGACGCGGCUCCGGCAUCGCCGGUUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC
....................(((...(((..((((((((((..........))))))))))...((((((((((((.(..(((....)))..).))))))))..)))))))...)))... (-36.99 = -37.22 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:11 2006