| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,824,249 – 5,824,363 |
| Length | 114 |
| Max. P | 0.847208 |
| Location | 5,824,249 – 5,824,363 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 90.29 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -23.75 |
| Energy contribution | -24.00 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5824249 114 + 20766785 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGUAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -27.00) >DroSec_CAF1 21699 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -29.00) >DroSim_CAF1 22800 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -29.00) >DroEre_CAF1 21927 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGGCCCCCAGACCCCGUCAUGGGUUCCAGUUGCAUCUUGGACUCCAGCUCCUCCACC ((((..(((((.(((((((........((........))......(..(((..(((((((.........))))))))))..)..)))))))..)))))...))))......... ( -30.00) >DroYak_CAF1 21874 113 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCUAGUUGCAUCUUGGAUUGCAGCUCCUCCUC- (((((((((((.((((((((...((((((((......))..............((((((...........)))))))))))).))))))))..))))).))))))........- ( -35.50) >DroAna_CAF1 19330 111 + 1 UCUGUUUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGCCGGUCUCCC---CGCCGCCAGCGGCUCGCGUUGCAUCUCCGUUUCCAGGUCCUCCCAC ((((.....((.((((((......((((.((......)).....(((.....))).)))).....---.((((....))))....)))))).)).......))))......... ( -20.90) >consensus GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((..(((((.(((((((....((((((........))..............((((((...........))))))..))))..))))))).)).)))...))))......... (-23.75 = -24.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:10 2006