Locus 1539

Sequence ID 2R_DroMel_CAF1
Location 5,817,803 – 5,817,922
Length 119
Max. P 1.000000
window2593

overview

Window 3

Location 5,817,803 – 5,817,922
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 67.69
Mean single sequence MFE -31.88
Consensus MFE -20.80
Energy contribution -19.37
Covariance contribution -1.43
Combinations/Pair 1.38
Mean z-score -3.97
Structure conservation index 0.65
SVM decision value 7.49
SVM RNA-class probability 1.000000
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5817803 119 - 20766785
UGAUCUAACCAAAGUAAUACACUUAGAAAGAUGUCUAGAAGAAUGCAUCUGUCUUAUCCCCUAUUUUCAGUCUGUUAUAGUCUCAAAACAGGAUGCAUUCUUUUGGACAGUUUCAUUG-A
...........((((.....)))).((((..(((((((((((((((((((..........((((...(.....)..))))..........))))))))))))))))))).))))....-. ( -32.75)
>DroSim_CAF1 16406 119 - 1
UGGUCUAACCAAAGUAAAACACUAAGAAAUAUGUCUAGAAGUAUGCAUCCGUCUUACCCCUUAUUAUCAGUCUGUAUUAGUUUUAAAACAGGGUGCACUCUUUUGGACAGUUUCUUUG-A
(((.....)))..........(.(((((((.((((((((((..(((((((((.(((...((...(((......)))..))...))).)).)))))))..))))))))))))))))).)-. ( -31.20)
>DroEre_CAF1 15449 103 - 1
UCGCCUAACCAAG-CUAAACUCUAACAAGGAUGUCUAAUAGUAUGUAUCAUCGUUC----------------UUUGCAAGUUGCAAAACAUGAUGCACCCCAUUAGACAGUUUCUUGGUA
.......((((((-..(((((((.....)))((((((((.(..((((((((.(((.----------------.((((.....)))))))))))))))..).)))))))))))))))))). ( -31.70)
>consensus
UGGUCUAACCAAAGUAAAACACUAAGAAAGAUGUCUAGAAGUAUGCAUCAGUCUUA_CCC_UAUU_UCAGUCUGUAAUAGUUUCAAAACAGGAUGCACUCUUUUGGACAGUUUCUUUG_A
.........................((((..((((((((((..(((((((........................................)))))))..)))))))))).))))...... (-20.80 = -19.37 +  -1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006