Locus 1538

Sequence ID 2R_DroMel_CAF1
Location 5,815,283 – 5,815,392
Length 109
Max. P 0.998787
window2592

overview

Window 2

Location 5,815,283 – 5,815,392
Length 109
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 91.02
Mean single sequence MFE -29.34
Consensus MFE -24.00
Energy contribution -25.00
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -3.19
Structure conservation index 0.82
SVM decision value 3.23
SVM RNA-class probability 0.998787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5815283 109 - 20766785
AAUCACAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAACAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUAGGCAGCCUGUGUUAUAUUAAUAC
......((.((((((...-.(((((((...((((..(--(....))..))))...))))))).)))))).))...(((((((((..((....))..)))))))))....... ( -26.50)
>DroSec_CAF1 12839 109 - 1
AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGACAGCAUGUGUUAUAUUAAUAC
......((.((((((...-.(((((((.....(((((--(.....))))))....))))))).)))))).))...((((((((((.((....)).))))))))))....... ( -32.00)
>DroSim_CAF1 13909 109 - 1
AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGGCAGCAUGUGUUAUAUUAAUAC
......((.((((((...-.(((((((.....(((((--(.....))))))....))))))).)))))).))...((((((((((.((....)).))))))))))....... ( -32.00)
>DroEre_CAF1 13015 109 - 1
AAUCGCAGUGCUAUCAAUGGUGAUAGUGUUAUCUUCU--UUUAUA-AGAGGUUUAACUAUCAAGGUUUAACUAUUUGUAGCACAUUCUCGGCAGCAUGUGCUAUAUUAACAC
.......(((((((.((((((((((((.....(((((--(....)-)))))....))))))........)))))).)))))))......((((.....)))).......... ( -28.10)
>DroYak_CAF1 13227 111 - 1
AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUUUCAGUUAUACAGAGGUUUAACUAUCAAGGUGAUUCUAUUUGUAGCACUUUCUUGGUAGCAUGUGUUAUAUUAUUAA
...((((.(((((((((.-..((((((...((((((..........))))))...))))))((((((...(.....)...)))))).)))))))))))))............ ( -28.10)
>consensus
AAUCGCAGUGCUAUCAAU_GUGAUAGUGUUAUCUUCU__UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGGCAGCAUGUGUUAUAUUAAUAC
......((.((((((.....(((((((...(((((............)))))...))))))).)))))).))...((((((((((.((....)).))))))))))....... (-24.00 = -25.00 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006