| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,813,618 – 5,813,736 |
| Length | 118 |
| Max. P | 0.535959 |
| Location | 5,813,618 – 5,813,736 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -51.29 |
| Consensus MFE | -26.27 |
| Energy contribution | -24.97 |
| Covariance contribution | -1.30 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5813618 118 - 20766785 CUGCUGCCACAGGAGCAGUGGCAUGGUAGCCCCAAUGGCAUGUUGGUUGGCCAGAUAGGCCUGUCGUUGGUUAGGCUGCGGUGUUAGGGGCAGUCCCACCACGUGGUAGCCCACGGCG-- ..((((((((.((.....((((((.(((((((((((((((........((((.....)))))))))))))...)))))).))))))(((.....))).))..))))))))........-- ( -53.60) >DroVir_CAF1 10024 118 - 1 UUGCUGCCACAUGAGCAGCGGCAUCGAGGCGCCUAUAGCAUGCCGAUUGGCCAAAUAUGCCUGCCGCUGCGCCGGCAACGGUGUGUGUGGCAGACCCACAAUGUGAUAGCUCAUUGUG-- ...(((((((((..(((((((((....(((((.....))..(((....))).......))))))))))))((((....))))..)))))))))...(((((((.(....).)))))))-- ( -58.20) >DroGri_CAF1 12429 118 - 1 UUGCUGCCACAUGAGCAGCGGCAUGGAGGCACCUAUGGCAUGUCGAUUGGCCAAAUAGGCUUGACGCUGUGCCGGCGACGGUGUGUGUGGCAGACCGACAAUAUGAUAGCUCAUUGCU-- ...(((((((((..((((((.(((((......))))).)..((((...((((.....)))))))))))))((((....))))..)))))))))..............(((.....)))-- ( -47.00) >DroEre_CAF1 11284 120 - 1 CUGCUGCCACAGGAGCAGCGGCAUGGAAGCCCCAAUGGCAUGUUGGUUGGCCAAAUAGGACUGCCGUUGGUUGGGCUGCGGAGUGAGGGGCAGUCCCACCACGUGGUAGCCACCUGCACC ..((((((((....((((((((......)))(((((((((..((((....)))).......)))))))))....)))))...(((..(((....)))..))))))))))).......... ( -53.90) >DroYak_CAF1 11421 118 - 1 CUGCUGCCACAGGAGCAGUGGCAUGGAAGCUCCAAUGGCAUGUUGGUUGGCCAAAUAGGCCUGUCGUUGGUUGGGCUGCGGAGUGAGGGGCAGUCCCACCACGUGGUAGCCACCUGCA-- (((((.(....).)))))..(((.((.....(((((((((........((((.....)))))))))))))...((((((.(.(((..(((....)))..))).).)))))).))))).-- ( -49.80) >DroMoj_CAF1 20415 118 - 1 UUGCUGCCACAUGAGCAGCGGCAUGGAGGCGCCUAUGGCAUGUCGAUUGGCCAAAUAUGCCUGACGCUGCGCUGGUGACGGCGUGGGGGGCAGACCUACAAUAUGAUAGCUCAUUGCU-- ..((((((....).)))))((((..(((.((((...))).(((((((((........((((...(.(..(((((....)))))..).)))))......)))).)))))))))..))))-- ( -45.24) >consensus CUGCUGCCACAGGAGCAGCGGCAUGGAAGCCCCAAUGGCAUGUCGAUUGGCCAAAUAGGCCUGACGCUGGGCCGGCUACGGUGUGAGGGGCAGACCCACAACGUGAUAGCCCACUGCA__ ((((((((....).)))))))((((...(((((..((((..........))))....((((.(........).))))..)))))...(((....)))....))))...((.....))... (-26.27 = -24.97 + -1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:04 2006