Locus 1531

Sequence ID 2R_DroMel_CAF1
Location 5,791,973 – 5,792,076
Length 103
Max. P 0.575267
window2584

overview

Window 4

Location 5,791,973 – 5,792,076
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.40
Mean single sequence MFE -24.59
Consensus MFE -21.18
Energy contribution -20.94
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.23
Structure conservation index 0.86
SVM decision value 0.08
SVM RNA-class probability 0.575267
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5791973 103 - 20766785
GCAUUUUGCUCAGUGUCUCUCUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCCACAAAUUCCAUUGCCUUUUCGAGUUGCAACA
(((....((((..((((...........))))....((((((.((((((....)))))).))))))..........................))))))).... ( -24.60)
>DroSec_CAF1 83239 103 - 1
GCGUCUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGUACGGCAGCAACAUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGGUGCAACA
((..((((....(((....(((((....((......((((((.((((((....)))))).))))))...)).)))))...)))........))))..)).... ( -24.30)
>DroSim_CAF1 83618 103 - 1
GCGUCUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGUUGCAACA
(((.((((....(((....(((((....((......((((((.((((((....)))))).))))))...)).)))))...)))........)))).))).... ( -24.20)
>DroEre_CAF1 85459 103 - 1
GCGUUUUGCUCGGUGUCUCUUUGUUUUUGAUAACUUUGUACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCCACAAAUUCCAUGGCCUUUUCGAGUUGCAACA
..(((..((((((.(((.....(..((((.......((((((.((((((....)))))).)))))).......))))..)...)))....))))))...))). ( -26.74)
>DroYak_CAF1 83298 103 - 1
GCGUUUGGCUUCGUGUCUCUUUGUAUUUGAUAACUUUGGACAGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUAGCCUUUUCGAGUUGCAACA
......(((.....)))...((((((((((...((.(((((((((((.....))))))).((((.......))))...)))).)).....))))).))))).. ( -23.10)
>consensus
GCGUUUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGUUGCAACA
(((....((((..((((...........))))....((((((.((((((....)))))).))))))..........................))))))).... (-21.18 = -20.94 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:57 2006