Locus 1523

Sequence ID 2R_DroMel_CAF1
Location 5,772,225 – 5,772,328
Length 103
Max. P 0.844277
window2572

overview

Window 2

Location 5,772,225 – 5,772,328
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 96.12
Mean single sequence MFE -30.40
Consensus MFE -28.20
Energy contribution -27.96
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.32
Structure conservation index 0.93
SVM decision value 0.76
SVM RNA-class probability 0.844277
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5772225 103 + 20766785
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGUGGCCUUGCGGAUAGGAAAUUCAAUU
..(((((..((...(((....(((((((.(((.....)))))))))).((((.....)))).)))..((.......)).)))))))((((.....)))).... ( -30.30)
>DroSec_CAF1 62562 103 + 1
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAUUGGCCUUGAGGAUAGGAAAUUCAAUU
..(((.(((((((....))..(((((((.(((.....)))))))))).))))).....))).(((((.(((.....)))...)))))................ ( -30.80)
>DroSim_CAF1 63543 103 + 1
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAUUGGCCUUACGGAUAGGAAAUUCAAUU
..(((.(((((((....))..(((((((.(((.....)))))))))).))))).....))).............(((((((((.......)))....)))))) ( -28.90)
>DroEre_CAF1 65551 103 + 1
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCGUCCAUGCACUCAGACAAAUAAAGUGGCCUUGCGAAUAGGAAAUUCAGUU
..(((((..((...(((....(((((((.(((.....)))))))))).((((.....)))).)))..((.......)).)))))))((((.....)))).... ( -30.70)
>DroYak_CAF1 62947 103 + 1
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGAGGCCUUGCGAAUAGGGAAUUCAAUU
..(((((((((((....))..(((((((.(((.....)))))))))).)))))......((.(((...........))))).))))((((.....)))).... ( -31.30)
>consensus
GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGUGGCCUUGCGGAUAGGAAAUUCAAUU
..((.....))...(((((..(((((((.(((.....)))))))))).((((.....))))..................)))))..((((.....)))).... (-28.20 = -27.96 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:46 2006