Locus 1522

Sequence ID 2R_DroMel_CAF1
Location 5,765,308 – 5,765,428
Length 120
Max. P 0.755531
window2571

overview

Window 1

Location 5,765,308 – 5,765,428
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.60
Mean single sequence MFE -43.07
Consensus MFE -22.43
Energy contribution -21.80
Covariance contribution -0.63
Combinations/Pair 1.31
Mean z-score -2.09
Structure conservation index 0.52
SVM decision value 0.49
SVM RNA-class probability 0.755531
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5765308 120 - 20766785
UAUUUGAUCACAUCCGAGGCGUAAGCCGCUGCAGAACCAGCUCCCUUGGCUCGUAUUCUCGCUGAGUGAUUCCUGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU
....(((((.((((.((((((((((((((((.(((.((......((..((..........))..))(((.......))))).))).)))))....))))).)))))))))).)))))... ( -43.00)
>DroPse_CAF1 57830 114 - 1
UACUUGAUCACGUCCAAUG------CAGCUCCCACUCCAGCUGCCUUGGCACGCACCCGUGCUGAAUGGUUGCGGUUGAGGCUUUCCAGCGCCUUGUUGACCGCCCCAAUGAGGUCACGG
..........(((((((.(------(((((........)))))).)))).)))...(((((((...(((..(((((((((((........)))))...)))))).)))....)).))))) ( -43.40)
>DroSec_CAF1 55707 120 - 1
UACUUGAUCACAUCCGAGGGGUAAGCCGCUGCAGAACUAGCUCCCUUGGCUCGUAUCCUCGCUGAGUGAUUCCUGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU
.((.(((((.((((.((((((((((((((((.(((......((.((..((..........))..)).))..(((....))).))).)))))....))))))).)))))))).))))).)) ( -43.20)
>DroEre_CAF1 55392 120 - 1
UAUUUGAUCACAUCGGAGGCGUAAGCCGCUGCUGAACCAGCUCCCUUGGCUCGUAUCCUCGCUGAGUGAUUCCGGUUCAGGCUCUCCAGCGCUUUGUUUACCGCCUCGAUGAGGUCACGU
....(((((.(((((.((((((((((((((((((((((.(.((.((..((..........))..)).))..).)))))))......)))))....))))).)))))))))).)))))... ( -46.10)
>DroAna_CAF1 55270 114 - 1
UACUUGAUCACAUCGGUGGGUGACCCCGCCAC------GGCUCCCUUGGCUCUAAUCUUGGCCGAAUGAUUCCGGUUCAGGCUCUCCAGUGCCUUGUUCACAGCCUCGAUGAGAUCGCGC
.....((((.((((((((((....))))))..------((((...((((((........))))))........((...((((........))))...))..))))..)))).)))).... ( -39.30)
>DroPer_CAF1 57199 114 - 1
UACUUGAUCACGUCCAAUG------CAGCUCCCACUCCAGCUGCCUUGGCACGCACCCGUGCUGAAUGGUUGCGGUUGAGGCUUUCCAGCGCCUUGUUGACCGCCCCAAUGAGGUCACGG
..........(((((((.(------(((((........)))))).)))).)))...(((((((...(((..(((((((((((........)))))...)))))).)))....)).))))) ( -43.40)
>consensus
UACUUGAUCACAUCCGAGG_GUAAGCCGCUGCAGAACCAGCUCCCUUGGCUCGUAUCCUCGCUGAAUGAUUCCGGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU
....(((((.((((...(((....)))(((........)))......(((..........((((........))))..((((........))))........)))..)))).)))))... (-22.43 = -21.80 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:45 2006