Locus 152

Sequence ID 2R_DroMel_CAF1
Location 1,419,386 – 1,419,506
Length 120
Max. P 0.994159
window337

overview

Window 7

Location 1,419,386 – 1,419,506
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.75
Mean single sequence MFE -29.90
Consensus MFE -27.72
Energy contribution -27.92
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.93
SVM decision value 2.46
SVM RNA-class probability 0.994159
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1419386 120 - 20766785
AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUCCAUUUUA
.((((..((..((((((.(....).))))))..)).))))..((.(((.((..((((((((((..(((.......)))...))))(((........)))....)))))).)).))).)). ( -26.50)
>DroSec_CAF1 37844 120 - 1
AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA
.((((..((..((((((.(....).))))))..)).))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -29.40)
>DroSim_CAF1 42897 120 - 1
AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA
.((((..((..((((((.(....).))))))..)).))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -29.40)
>DroEre_CAF1 36348 119 - 1
AUCGACAU-GGCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA
.((((...-.(((((((.(....).)))))))....))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -32.60)
>DroYak_CAF1 37140 120 - 1
AUCGACGUUGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUGGUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA
.((((...(((.(((((.(....).))))))))...))))(((((.(((..((......))..))).((((((((.((.((((((.........)).))))..)).))))))))))))). ( -31.60)
>consensus
AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA
.((((....(.((((((.(....).)))))))....))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). (-27.72 = -27.92 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006