Locus 1518

Sequence ID 2R_DroMel_CAF1
Location 5,753,463 – 5,753,568
Length 105
Max. P 0.872686
window2566

overview

Window 6

Location 5,753,463 – 5,753,568
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -31.93
Consensus MFE -24.05
Energy contribution -24.17
Covariance contribution 0.11
Combinations/Pair 1.19
Mean z-score -1.68
Structure conservation index 0.75
SVM decision value 0.88
SVM RNA-class probability 0.872686
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5753463 105 + 20766785
-AAAG---UACAUUUUA----------U-UUACAGGCAAGGAGAUGGUCGACUAUAUUGCAGACUAUUUGGAGAACAUCCGGGAACGCCGAGUUUUUCCGGAUGUCAGUCCGGGCUAUAU
-....---.........----------.-.....(((..((((((((((..(......)..)))))))....((.((((((((((.((...)).))))))))))))..)))..))).... ( -31.40)
>DroSim_CAF1 44833 105 + 1
-AAUG---UAAACUUUA----------U-UUACAGGCAAGGAGAUGGUCGACUAUAUUGCGGACUAUCUGGAGAACAUCCGGGAACGCCGAGUUUUUCCGGAUGUGAGUCCCGGCUACAU
-..((---((((.....----------)-)))))(((....((((((((..(......)..))))))))(((..(((((((((((.((...)).)))))))))))...)))..))).... ( -34.70)
>DroEre_CAF1 44031 111 + 1
-AAUU---UCCAUUUUA----UUUCCAU-UUACAGGCAAGGAGAUGGUCGACUACAUCGCAGACUAUCUGGAGAACAUCCGGGAGCGGCGAGUUUUUCCGGAUGUAAGUCCCGGAUAUAU
-....---(((......----(((((..-...(......).((((((((..(......)..)))))))))))))((((((((((((.....))..)))))))))).......)))..... ( -32.30)
>DroYak_CAF1 44082 111 + 1
-AACU---AAAAUUGUA----UUUCCCU-UUACAGGCAAGGAGAUGGUCGACUAUAUUGCAGACUAUCUGGAGAACAUCCGGGAACGCCGAGUUUUUCCGGAUGUAAGUCCCGGCUAUAU
-....---.....((((----.......-.))))(((..((((((((((..(......)..)))))))......(((((((((((.((...)).)))))))))))...)))..))).... ( -34.70)
>DroMoj_CAF1 69527 119 + 1
AAAUUCAAACAAGUUAAGCUAUUUUUUU-UCGCAGGCAAGGAGAUGGUAGACUAUAUAGCAGACUAUUUGGAGAACAUACGGGAGCGUCGCGUCUUUCCGGAUGUGAGUCCGGGCUAUAU
...........((((..(((((((((((-.(....).))))))))))).))))(((((((.........(((((....(((....)))....)))))((((((....))))))))))))) ( -30.90)
>DroAna_CAF1 44783 106 + 1
-AAAA---UAACUAUAA----------UGUUUUAGGAAAAGAGAUGGUCGACUAUAUAGCCGAUUAUUUGGAGAACAUUCGAGAGCGACGCGUCUUCCCGGACGUAAGUCCCGGCUAUAU
-....---..(((((..----------..(((....)))....))))).....(((((((((.......(((((....(((....)))....)))))..((((....))))))))))))) ( -27.60)
>consensus
_AAUU___UAAAUUUUA__________U_UUACAGGCAAGGAGAUGGUCGACUAUAUUGCAGACUAUCUGGAGAACAUCCGGGAACGCCGAGUUUUUCCGGAUGUAAGUCCCGGCUAUAU
..................................(((....((((((((..(......)..))))))))(((..((((((((((((.....))..))))))))))...)))..))).... (-24.05 = -24.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:40 2006