| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,746,571 – 5,746,671 |
| Length | 100 |
| Max. P | 0.982928 |
| Location | 5,746,571 – 5,746,671 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.10 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -16.02 |
| Energy contribution | -16.55 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.982928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5746571 100 + 20766785 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCACAACACGAAGGAAAAC--GAGCA---C-------------AGUCGAACGAACGUUUG--UUGCGCA ......(((.((.(((...((((.....))))..((((......))))..)))))))).(....).....--..((.---(-------------((.(((((....)))))--))).)). ( -25.10) >DroPse_CAF1 37583 87 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCGGGA-AAACUGGAAGCG--GACACGAGUCGAUAC--GCA--------------------CUCGG------CAUUG--CUGCGCA ..............((((((((((.(((((....((((..-...)))).....--(((....))).....--)))--------------------)).))------)))))--.)))... ( -29.80) >DroEre_CAF1 37153 96 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCACAACACGAAGGAAAAC--GAGCA---C-------------AGUCGA----GCGUUUG--UUGCGCA .............(((.....)))..((((....((((......))))...........(....).....--..)))---)-------------......----((((...--..)))). ( -23.00) >DroWil_CAF1 137212 104 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGUGGAAAUGGAAGUGGAAAUGCGAGUA---A---------CGAAAUGCGC----GCCUUUACAGUGCGCA ......((((.(..((((....(((..(.(((..((((......))))..))).)..)))........)))).).))---)---------)....(((((----((.......))))))) ( -29.50) >DroAna_CAF1 38045 110 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCC--GCCCGAGUGCUAAC--GAGUGCCACAACGAGGCAUGAGACUCGG----GGCAUUG--UUGCGCA ....(((((....(((.....)))..........((((......)))).)))))--.(((((((.((...--..(((((.......))))).))))))))----)(((...--.)))... ( -41.30) >DroPer_CAF1 37672 87 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCGGGA-AAACUGGAAGCG--GACACGAGUCGAUAC--GCA--------------------CUCGG------CAUUG--CUGCGCA ..............((((((((((.(((((....((((..-...)))).....--(((....))).....--)))--------------------)).))------)))))--.)))... ( -29.80) >consensus AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCC__AACACGAGUGGAAAC__GAG_A___C_____________ACUCGG____GCCAUUG__UUGCGCA .............(((.....)))..(((((...((((......))))...........((((................................))))...............))))). (-16.02 = -16.55 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:38 2006