Locus 1513

Sequence ID 2R_DroMel_CAF1
Location 5,731,720 – 5,731,822
Length 102
Max. P 0.831381
window2560

overview

Window 0

Location 5,731,720 – 5,731,822
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -36.32
Consensus MFE -31.78
Energy contribution -31.62
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.88
SVM decision value 0.72
SVM RNA-class probability 0.831381
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5731720 102 + 20766785
UGAUUGUGGAUGUAGCUAGGGCACGCAUAUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU
....((((..(((.((((((((((((....))))))))))))((.....)))))..))))............((((.((((((......))))))...)))) ( -39.50)
>DroSec_CAF1 22236 101 + 1
UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU
....((((..(((.((((.-((((((....))))))..))))((.....)))))..))))............((((.((((((......))))))...)))) ( -34.30)
>DroSim_CAF1 21406 101 + 1
UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU
....((((..(((.((((.-((((((....))))))..))))((.....)))))..))))............((((.((((((......))))))...)))) ( -34.30)
>DroEre_CAF1 22301 100 + 1
UGAUUGUGGAUGU-GCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCGCGCACAGACACUCAGAAACGAACUACUCAUGCACAGGGGCGUGUGUAGCGGGGC
..........(.(-(((((-((((((.((((((((.((((((((...)))).)))))))........((.....))..)))))...)))))))))))).).. ( -36.60)
>DroYak_CAF1 22219 101 + 1
UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCGCGCACAGACACACAGAAGCGAACUACUCAUGCACAGGGGCGUGUGCAGCAGGGC
..............(((.(-((.(((.(.((((((.((((((((...)))).)))))))))).).))).........((((((......))))))))).))) ( -36.90)
>consensus
UGAUUGUGGAUGUAGCUAU_GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU
.....(((..(((.((((..((((((....))))))..))))((.....)))))..)))..............(((.((((((......))))))...))). (-31.78 = -31.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:34 2006