Locus 1510

Sequence ID 2R_DroMel_CAF1
Location 5,720,211 – 5,720,331
Length 120
Max. P 0.833788
window2555

overview

Window 5

Location 5,720,211 – 5,720,331
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -38.46
Consensus MFE -38.01
Energy contribution -37.43
Covariance contribution -0.58
Combinations/Pair 1.20
Mean z-score -0.94
Structure conservation index 0.99
SVM decision value 0.72
SVM RNA-class probability 0.833788
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5720211 120 - 20766785
GACUCGGAAGAGAUGCGUCUGGUGUCGCGCAUCUUCCAAACGGCCAAGUCGAUAGCCGAACUCAAACUGACUGAAACCGAACUGGCGCUGUAUCAGAGCUUAGUGCUGCUCUGGCCAGGU
.....((((((..((((.(....).))))..))))))...(((...(((((................)))))....)))..(((((.......((((((........))))))))))).. ( -39.30)
>DroVir_CAF1 21953 120 - 1
GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUAUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU
...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. ( -37.21)
>DroGri_CAF1 18379 120 - 1
GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCCAUAGCCGAACUUAAACUGACUGAAACCGAACUGGCGCUUUACCAGAGUCUAGUGCUGCUCUGGCCAGGU
...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. ( -37.21)
>DroWil_CAF1 93123 120 - 1
GAUUCGGAGGAGAUGCGUCUAGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACUGAACUGGCGCUGUAUCAGAGUCUUGUAUUACUCUGGCCGGGU
..(((((.((((((((((........))))))))))....((((((......))))))............)))))......(((((.......((((((........))))))))))).. ( -37.81)
>DroMoj_CAF1 19951 120 - 1
GAUUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUAUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU
..(((((..(((((((((........))))))))).....((((((......))))))..................)))))(((((.......((((((........))))))))))).. ( -38.01)
>DroAna_CAF1 12991 120 - 1
GACUCGGAGGAGAUGCGCCUGGUGUCGCGCAUCUUCCAAACGGCCAAGUCGAUAGCCGAACUUAAACUGACUGAAACCGAACUGGCGCUGUACCAGAGUUUAGUAUUGCUCUGGCCAGGU
...((((.((((((((((........))))))))))....((((..........))))..................)))).(((((.......((((((........))))))))))).. ( -41.21)
>consensus
GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUGUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU
...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. (-38.01 = -37.43 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:29 2006