Locus 1507

Sequence ID 2R_DroMel_CAF1
Location 5,707,048 – 5,707,148
Length 100
Max. P 0.505603
window2552

overview

Window 2

Location 5,707,048 – 5,707,148
Length 100
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -33.07
Consensus MFE -15.55
Energy contribution -15.47
Covariance contribution -0.08
Combinations/Pair 1.27
Mean z-score -1.94
Structure conservation index 0.47
SVM decision value -0.05
SVM RNA-class probability 0.505603
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5707048 100 - 20766785
AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCUCCAAGUGUUGGCCCA-----GGGUGCAAAAGUCAUUGUUAC--UGGAUGUACAUACAAAUGUAUGUGCGUCUAU
....((((((.(..(((((((((.....)))).)))))..))))))).-----.(((((((......))).)))--)((((((((((((....)))))))))))).. ( -40.80)
>DroPse_CAF1 31379 90 - 1
AAGCGGGCUACGUGCCCGGGUUAAUUUGCGGCCCGAAGUGUUGGCUGA-----GGGUGCGAAAGUCUCUGCUAA--UGUGUGC--------GUGUAUCU--GUGUAU
..(((((.((((..(.((((((.......))))))..(..(((((.((-----(...((....))))).)))))--..))..)--------)))..)))--)).... ( -31.00)
>DroEre_CAF1 35162 100 - 1
AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCA-----GGGUGCAAAAGUCAUUGUUAC--GGGGUGUACAUAGAAAUGUAUGUGAGUCUAU
....(((((((((((((((((((((...((....))...)))))))))-----).(((((...((.......))--....)))))........)))))).))))).. ( -29.70)
>DroYak_CAF1 35691 102 - 1
AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCACCAAGUGUUGUCCCG-----GGGUGCAAAAGUCAUUGUUACUGGGGGUGUACAUAGAAAUGUAUGUGCGUCUAU
....((((.(((..(((((((((.....)))).)))))..)..(((((-----(...((((......))))..))))))))(((((((......))))))))))).. ( -31.20)
>DroAna_CAF1 37018 103 - 1
AAGCGAGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCAAGUGGGGGUGCGAAAGUCAUUGUUACUCUGAAUGU----UUGCUUGUAUGCCUACAUAU
((((((((..(.(((((((((((((...((....))...))))))))))))).)(((((....).))))............))----))))))(((((....))))) ( -34.70)
>DroPer_CAF1 31109 90 - 1
AAGCGGGCUACGUGCCCGGGUUAAUUUGCGGCCCGAAGUGUUGGCUGA-----GGGUGCGAAAGUCUCUGCUAA--UGUGUGC--------GUGUAUCU--GUGUAU
..(((((.((((..(.((((((.......))))))..(..(((((.((-----(...((....))))).)))))--..))..)--------)))..)))--)).... ( -31.00)
>consensus
AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCA_____GGGUGCAAAAGUCAUUGUUAC__UGGGUGU____A_AAAUGUAUGUG_GUCUAU
.((((((((..(..(((((((((((...((....))...))))))))......)))..)...)))..)))))................................... (-15.55 = -15.47 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:26 2006