Locus 1505

Sequence ID 2R_DroMel_CAF1
Location 5,704,184 – 5,704,275
Length 91
Max. P 0.860418
window2549

overview

Window 9

Location 5,704,184 – 5,704,275
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -36.30
Consensus MFE -26.17
Energy contribution -28.87
Covariance contribution 2.70
Combinations/Pair 1.14
Mean z-score -2.18
Structure conservation index 0.72
SVM decision value 0.83
SVM RNA-class probability 0.860418
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5704184 91 + 20766785
AGCAGCAGCGUUGGCGAGCGAGUGAGCGAAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU
....(((((.((((((..((((((.........))))))..))))))..-))))).(((((((.(((.(..(.....)..).)))))))))) ( -40.70)
>DroSec_CAF1 31883 91 + 1
AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU
.......(((((((((((((..(((((((...)))))))..)))...((-(((.((.(((((.....))))).))))).)).)))))))))) ( -40.80)
>DroSim_CAF1 34517 91 + 1
AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU
.......(((((((((((((..(((((((...)))))))..)))...((-(((.((.(((((.....))))).))))).)).)))))))))) ( -40.80)
>DroEre_CAF1 32336 92 + 1
AGCAGAAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAAUGUUGCGACGCCGAACGACGGCGGCGAACAUCGUCGUUGGCGC
.......((((..(((((((..(((((((...)))))))..)))....(((((.((.(((((.....))))).)))))))..))))..)))) ( -42.00)
>DroYak_CAF1 32952 91 + 1
AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAA-GUUGCGACGUCGAACGAAGGCGGCGAACAUCAUCGUCGGCGC
.......(((((((((((((..(((((((...)))))))..))).....-(((.((.((((.......)))).)))))....)))))))))) ( -37.10)
>DroAna_CAF1 33784 69 + 1
--UAGUUGCGUUGCCGAGCGAAC--------UUCAAAUGAAACCGAAAA-G---------CCAACGACGACGUCGAACAGC---GUUGGCGA
--.((((.((((....)))))))--------).................-(---------((((((.((....)).....)---)))))).. ( -16.40)
>consensus
AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAA_GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU
.......(((((((((((((..((((((.....))))))..)))......(((.((.(((((.....))))).)))))....)))))))))) (-26.17 = -28.87 +   2.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:23 2006