Locus 1504

Sequence ID 2R_DroMel_CAF1
Location 5,701,855 – 5,701,956
Length 101
Max. P 0.940299
window2548

overview

Window 8

Location 5,701,855 – 5,701,956
Length 101
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 91.17
Mean single sequence MFE -29.61
Consensus MFE -26.50
Energy contribution -27.10
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.90
SVM decision value 1.29
SVM RNA-class probability 0.940299
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5701855 101 + 20766785
CGCUUGCAUCUGGAGCAGCUUUGUGUAGUUUA-----CGGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUGGUCAA
.((((.......)))).(((((((((.(....-----).))))))))).((((..(......(((.((((.((........)).)))).)))......)..)))). ( -29.00)
>DroSec_CAF1 29570 96 + 1
CGCUUGCAUCUAGAGCAGCUUUGUGUACUUUA-----CUACAAAAAG-----CUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA
.((((.......))))((((((.((((.....-----.)))).))))-----))(((((((.....((..(((.....((....))....)))..))))))))).. ( -26.60)
>DroSim_CAF1 32214 106 + 1
CGCUUGCAUCUGGAGCAGCUUUGUGUACUUUACUCUACUACACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA
.((((((.......)))((((((((((...........))))))))))..)))((((((((.....((..(((.....((....))....)))..)))))))))). ( -30.70)
>DroEre_CAF1 30025 101 + 1
CGCUUACAUCUGAAGCAGCUUUGUGUACUUUA-----UUGCACAAAGCCCGGCUGGCAAAUUGGAAGUUGGGGUCAUCAGUUUGCAACAUCCCUGACAUUUGUCAA
.((((.(....))))).((((((((((.....-----.)))))))))).....((((((((.....((..(((.................)))..)))))))))). ( -29.93)
>DroYak_CAF1 30628 101 + 1
CGCUUACAUCUGGAGCAGCUUUGUGUACUUUA-----CUGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUAUGUUUGCAACAUCCCUGACAUUUGUCAA
.((((.......)))).((((((((((.....-----.)))))))))).....((((((((.....((..(((....((((.....)))))))..)))))))))). ( -31.80)
>consensus
CGCUUGCAUCUGGAGCAGCUUUGUGUACUUUA_____CUGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA
.((((.......)))).((((((((((...........)))))))))).....((((((((.....((..(((.....((....))....)))..)))))))))). (-26.50 = -27.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006