Locus 1501

Sequence ID 2R_DroMel_CAF1
Location 5,687,535 – 5,687,634
Length 99
Max. P 0.808577
window2544

overview

Window 4

Location 5,687,535 – 5,687,634
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 71.61
Mean single sequence MFE -19.29
Consensus MFE -8.62
Energy contribution -9.15
Covariance contribution 0.53
Combinations/Pair 1.31
Mean z-score -1.88
Structure conservation index 0.45
SVM decision value 0.64
SVM RNA-class probability 0.808577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5687535 99 - 20766785
ACACUUU--CUCCUUCUUUAAAUGAAU-GGAAAAGUUUCCA--AAUCUGAAUACAAAGCCCUCAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA
..(((((--.((((((.......))).-)))))))).....--........((((..(((((((.....(((((((........))).))))))))))))))). ( -26.30)
>DroPse_CAF1 21875 94 - 1
A-ACUUC--CUCCGCCCGAAACGAAAUUGAAAGACUUUCCCAAAAUCGAAAUGCAACACU-UCG----UUGUGUGGCCAUU--CUGAACUUGAGAGAAGUGUAA
.-(((((--(((..........((((((....)).))))......(((.(((((.((((.-...----..)))).).))))--.)))....))).))))).... ( -17.80)
>DroSec_CAF1 24473 85 - 1
A-AUUUUAAGUUCUCACUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUGUAUACAAAGCCCUCAUUU---------------UCUGGACACAUGAGGGCUGUAA
.-........................(-((((....)))))--........((((..((((((((..---------------.........)))))))))))). ( -18.10)
>DroSim_CAF1 27139 84 - 1
ACACUUU--CUCCUCACUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUGUAUACAAAGCCCUCAUUU---------------UCUGGACACAUGAGGGCUGUAA
.......--.................(-((((....)))))--........((((..((((((((..---------------.........)))))))))))). ( -18.10)
>DroEre_CAF1 25054 99 - 1
ACACUUU--CUCCUUUCUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUAAAUACAAAGCCCUUAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA
.......--.................(-((((....)))))--........((((..(((((((.....(((((((........))).))))))))))))))). ( -21.60)
>DroYak_CAF1 25571 99 - 1
ACACUUU--CUCUUUCUUUUAAUAAGU-GCAAACGUUUCCA--AAUCUAAAUUCAAAGCUUUUAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA
.(((((.--..............))))-)............--.............((((((((.....(((((((........))).)))))))))))).... ( -13.86)
>consensus
ACACUUU__CUCCUCCCUUUAAUAAAU_GGAAAAGUUUCCA__AAUCUAAAUACAAAGCCCUCAUUU_CUGUGCCGCAAUU_UCUGGACACAUGAGGGCUGUAA
............................((((....))))...........((((..((((((((..........................)))))))))))). ( -8.62 =  -9.15 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006