| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,659,256 – 5,659,361 |
| Length | 105 |
| Max. P | 0.768977 |
| Location | 5,659,256 – 5,659,361 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.42 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5659256 105 - 20766785 GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCCUAGCCUCCCGCGUGGUUAAAGUCGAGAGGCAGGUGAG-CUACAAUCUAAAAAGAAAAACAUUAAAACAAUGGUA-------- .((((.((((((....)))))).......((((.(((((.(((.........).)).)))))))))...-...............................)))).-------- ( -28.10) >DroSec_CAF1 735 102 - 1 GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCCUAGCCUCCCGCGUGGUUAAAGUCGAGCGGCAGGUGAG-CUAGAAUCU-AAA--AUAAACAUUAAACCGAUGGUA-------- .((((.((((((....))))))......(((...((((.((((.(((......))).)))).))))..)-)).......-...--................)))).-------- ( -29.50) >DroSim_CAF1 734 103 - 1 GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCCUAGCCUCCCGCGUGGUUAAAGUCGAGCGGCAGGUGAG-CUAGAAUCUUAAA--AAAAGCAUUAAACCGAUGGUA-------- .((((.((((((....))))))......(((...((((.((((.(((......))).)))).))))..)-))...........--................)))).-------- ( -29.50) >DroEre_CAF1 747 109 - 1 GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCUUAGCCUCCCGCGUGGUUAAAGUCGAGCGGCAGGUGAG-CGGCAAUC--AAU--UAAAGCAUUUAAACGAUUAUUCGUUUUAU .(((..((((((....)))))).......(((((.(((.((((.(((......))).)))).)))))))-))))....--...--..........((((((....))))))... ( -36.40) >DroYak_CAF1 734 101 - 1 GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCCUAGCCUCCCGCGUGGUUAAAGUCGAGCGGCAGGUGAG-CUACAAUC--AAA--UAAAGCAUAUAAACAAUUAUG-------- .((...((((((....))))))......(((...((((.((((.(((......))).)))).))))..)-))......--...--....))...............-------- ( -26.50) >DroAna_CAF1 728 102 - 1 GGCCAAGGAUGUGUACGCAUCUAAGAUAAGCUUAGCCUCUAGGGUGGUUAAAGUCGAGCGGCAGGUAAGGAUAUGAUUU-AAA--AUAUAUCUUAAA-UAAAGAAA-------- .(((..((((((....)))))).......((((((((.(....).))))......))))))).....((((((((....-...--.))))))))...-........-------- ( -22.60) >consensus GGCCAAGGAUGUAUAUGCAUCCAAAAUAAGCCUAGCCUCCCGCGUGGUUAAAGUCGAGCGGCAGGUGAG_CUACAAUCU_AAA__AAAAACAUUAAAACAAUGAUA________ (((...((((((....)))))).......)))..((((.((((.(((......))).)))).))))................................................ (-19.08 = -19.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:05 2006