Locus 149

Sequence ID 2R_DroMel_CAF1
Location 1,417,582 – 1,417,682
Length 100
Max. P 0.665797
window334

overview

Window 4

Location 1,417,582 – 1,417,682
Length 100
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 69.55
Mean single sequence MFE -21.99
Consensus MFE -13.39
Energy contribution -15.28
Covariance contribution 1.89
Combinations/Pair 1.05
Mean z-score -1.33
Structure conservation index 0.61
SVM decision value 0.28
SVM RNA-class probability 0.665797
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1417582 100 - 20766785
---AUAUCUCGUAGAGGAAGACG-------------AUAUACUAGACUCGAUGAAAUGUCUGAAACCUGCGAUGAUUUAGUCUUGUCCUACGAAGCAUUACGGUGACAAAAUAUCA
---.....((((((.(.(((((.-------------......(((((..........)))))....(......).....))))).).))))))........(....)......... ( -18.40)
>DroSec_CAF1 35880 82 - 1
AGUAGAUCUCGUAGAUAUAGA---------------------------CGAUGAAGUUUCUGAAAUCUGCGAUGAUUUAUUCUUGUCC-------UAUUACGGUGACAAAAUAUCA
((((((((((((((((..(((---------------------------(......)))).....)))))))).)))))))).((((((-------(.....)).)))))....... ( -20.60)
>DroSim_CAF1 40888 116 - 1
AGUAGAUCUCGUAGAGAAAGACAUUGACAUAUAGAUAUGUACUAGACUCGAUAAGGUGUCUGAAAUCUGCGAUGAUUUAUUCUUGCCAUACGAAGUAUUACGGUGACAAAAUAUCA
(((((((((((((((...(((((((.(((((....)))))..............)))))))....))))))).)))))))).(..((((((...))))...))..).......... ( -26.96)
>consensus
AGUAGAUCUCGUAGAGAAAGAC______________AU_UACUAGACUCGAUGAAGUGUCUGAAAUCUGCGAUGAUUUAUUCUUGUCCUACGAAGUAUUACGGUGACAAAAUAUCA
.((((((((((((((...(((((.................................)))))....))))))).))))))).....................(....)......... (-13.39 = -15.28 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:09 2006