Locus 1487

Sequence ID 2R_DroMel_CAF1
Location 5,642,448 – 5,642,559
Length 111
Max. P 0.878382
window2526

overview

Window 6

Location 5,642,448 – 5,642,559
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.83
Mean single sequence MFE -30.31
Consensus MFE -26.14
Energy contribution -26.18
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.90
SVM RNA-class probability 0.878382
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5642448 111 + 20766785
CGGGCUUGAAUGGUUUCAGCCUUUGUCCUGGCUUUUUCCCACAAUCGAAA-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGA
.(((((.(((....))))))))...(((..((((.(((((.....((((.-........(((((((((....))))))))).........))))....)))))..--------))))))) ( -32.87)
>DroSec_CAF1 9066 109 + 1
CGGGCU--AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGC
.((((.--...(((....)))...)))).(((..................-........(((((((((....)))))))))((((((.(....).))))))....--------....))) ( -32.10)
>DroSim_CAF1 9201 109 + 1
CGGGCU--AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGC
.((((.--...(((....)))...)))).(((..................-........(((((((((....)))))))))((((((.(....).))))))....--------....))) ( -32.10)
>DroEre_CAF1 9540 118 + 1
CGGGCU--AAUGGCUUUAGCUUUUGUCCUGCCUUUUUCCCACAUUCGAUUUUUACAUAAGAGAAGGCUUAAAGGCCAUUUCCCCUUGCCAUUUGUCAAGGGAACUAACCAACUAACCGGA
(((...--(((((((((.((....))...((((((((......................))))))))...)))))))))..((((((.(....).))))))..............))).. ( -28.95)
>DroYak_CAF1 9084 110 + 1
CGGGCU--AAUGGCUUCAGCUUUUGUCCUGCCUUUUUCCCACACUCGAGUUUUACAUAAGAGAAGGCUUUAAGCCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AGUCGGA
.(((((--...(((....)))........((((((((......................))))))))....)))))..((((.((((.(....).))))))))..--------....... ( -25.55)
>consensus
CGGGCU__AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC_UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU________AAGCGGA
.((((......(((....)))...))))..........((...................(((((((((....)))))))))((((((.(....).))))))................)). (-26.14 = -26.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:01 2006