Locus 1478

Sequence ID 2R_DroMel_CAF1
Location 5,636,274 – 5,636,387
Length 113
Max. P 0.930320
window2516

overview

Window 6

Location 5,636,274 – 5,636,387
Length 113
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.81
Mean single sequence MFE -31.76
Consensus MFE -28.46
Energy contribution -28.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.90
SVM decision value 1.20
SVM RNA-class probability 0.930320
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5636274 113 + 20766785
ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU
.....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20)
>DroSec_CAF1 2994 113 + 1
ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU
.....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20)
>DroSim_CAF1 3075 113 + 1
ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU
.....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20)
>DroEre_CAF1 3375 111 + 1
AAUAAGCGCGUAACAAGAACAAGCGAGACCCCGAAAUCUUUUUUCAUCUCGUUCU--------UUGCGUCUUUGAGUGUGCGUGCCAAAAGUCAAAUACGUCAUCGACGCGCGCAUCAU
.....((((.....((((....((((((....((((.....)))).)))))))))--------).(((((..(((((((...((.(....).)).)))).)))..)))))))))..... ( -30.90)
>DroYak_CAF1 2974 111 + 1
ACUAAGCGCGUAACAAGAACAAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCU--------UUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCGU
.....((((((............(((((....((((.....)))).)))))(((.--------.(((((.(((((((............))))))).))).))..)))))))))..... ( -31.30)
>consensus
ACUAAGCGCGUAAC______AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU
.....((((..............(((((....((((.....)))).)))))..............(((((..(((((((...((........)).)))).)))..)))))))))..... (-28.46 = -28.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:50 2006