Locus 1477

Sequence ID 2R_DroMel_CAF1
Location 5,635,841 – 5,635,945
Length 104
Max. P 0.654209
window2515

overview

Window 5

Location 5,635,841 – 5,635,945
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.05
Mean single sequence MFE -34.01
Consensus MFE -26.20
Energy contribution -26.84
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.654209
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5635841 104 - 20766785
GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUUCCGUGGCACGCACUAUCCAGACCAACUUAU------------CUAUCUACAU
......((.((.----.(((((((((((((((((...((....))...))))))))..((........))...)))))))).)..)).))........------------.......... ( -29.20)
>DroSec_CAF1 2536 104 - 1
GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU------------CUAUUCACAU
......((.((.----.(((((((((((((((((...((....))...))))))))..(((......)))...)))))))).)..)).))........------------.......... ( -34.60)
>DroSim_CAF1 2617 104 - 1
GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU------------CUAUUCACAU
......((.((.----.(((((((((((((((((...((....))...))))))))..(((......)))...)))))))).)..)).))........------------.......... ( -34.60)
>DroEre_CAF1 2888 118 - 1
GUGUAUGUGUGU--GUGUCUGCGUGCGCCUUUGUGAAAUGCAAGUAAAACAAAGGCAGGGCCAAUUUACCGUGGCACGCACUUUGCAGAGCAACCUACAUAUGUACAUACAUAUUCACUU
(((((((((..(--((((.(((((((((((((((..............)))))))).((.........))...)))))))..((((...))))...)))))..)))))))))........ ( -43.94)
>DroYak_CAF1 2513 108 - 1
GUGUACGUGUGUACGGGUAUGUGUGGGUCUUUGUGGAAUGCACGUAAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUCUUCAGGCCAACUUAU------------CUAUUCACUU
........(((...(((((.((...(((((....(((.(((..(.....)....((..(((......)))...))..))).)))..))))).)).)))------------))...))).. ( -27.70)
>consensus
GUGCACGUGUGU____GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU____________CUAUUCACAU
......((.((.......((((((((((((((((...((....))...))))))))..(((......)))...))))))))....)).)).............................. (-26.20 = -26.84 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:48 2006