Locus 1472

Sequence ID 2R_DroMel_CAF1
Location 5,622,610 – 5,622,703
Length 93
Max. P 0.996614
window2507

overview

Window 7

Location 5,622,610 – 5,622,703
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 93.38
Mean single sequence MFE -21.72
Consensus MFE -18.20
Energy contribution -18.56
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.51
Structure conservation index 0.84
SVM decision value 2.72
SVM RNA-class probability 0.996614
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5622610 93 + 20766785
AUCGCACCCACACACAACCGAUGACUGCUCCCGAAUUUCCCCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA
(((((...........................((((......))))...(((-(((((((((......))))))))).)))...)))))..... ( -20.10)
>DroSec_CAF1 12288 94 + 1
AUCGCACCCACACACAACCGAUGACCGCUCCCGAAUUUCCCCAUUCCUCGCGAGUAAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA
(((((...........................((((......))))...(((((((((((((......)))))))))))))...)))))..... ( -25.10)
>DroSim_CAF1 18822 94 + 1
AUCGCACCCACACACUACCGAUGACCGCUCCCGAAUUUCCCCAUUCCUCGCGAGUAAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA
(((((...........................((((......))))...(((((((((((((......)))))))))))))...)))))..... ( -25.10)
>DroEre_CAF1 12125 92 + 1
AUCGCACCCACCCACAACCGAUGACAGCUCCCGAACUUC-CCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAAACA
(((((..............((((..((........))..-.))))....(((-(((((((((......))))))))).)))...)))))..... ( -18.90)
>DroYak_CAF1 11931 93 + 1
ACGGCACCCACCCACAACCGAUGACAGCUCCCGAAUUUCCCCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA
..(((.....................(((...((((......))))..)))(-(((((((((......)))))))))).)))............ ( -19.40)
>consensus
AUCGCACCCACACACAACCGAUGACAGCUCCCGAAUUUCCCCAUUCCCAGCG_GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA
(((((...........................((((......))))...(((.(((((((((......))))))))).)))...)))))..... (-18.20 = -18.56 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:40 2006