Locus 1469

Sequence ID 2R_DroMel_CAF1
Location 5,609,508 – 5,609,622
Length 114
Max. P 0.578847
window2502

overview

Window 2

Location 5,609,508 – 5,609,622
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.62
Mean single sequence MFE -43.67
Consensus MFE -22.58
Energy contribution -23.62
Covariance contribution 1.03
Combinations/Pair 1.30
Mean z-score -1.90
Structure conservation index 0.52
SVM decision value 0.09
SVM RNA-class probability 0.578847
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5609508 114 - 20766785
GUUGGUGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGUUCACCGCUGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCGGAAUUAGCGGCGGAAUUGGCGGACGGAAAUGCCUG
((..(((.((((......)))).)))..))((((...(((.((((((......((((((((((......))).)))))))...)))))).)))..))))((.((....)))).. ( -45.10)
>DroSec_CAF1 7918 102 - 1
GUUGGCGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGCUUACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCG------------GAAUUGGCGGACGGAAAUGCCUG
..((((((.((((.((....)).)))).))))))..((((.(((((((((...((((((((((......))).))))))------------)...)))))).))).)).))... ( -44.70)
>DroSim_CAF1 5937 114 - 1
GUUGGCGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGUUUACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCGGAAUUAGCGGCGGAAUUGGCGGACGGAAAUGCCUG
..((((((.((((.((....)).)))).))))))..((((.(((((((((...(((((((((((.((((......)))).)))).)))))))...)))))).)))))))..... ( -49.80)
>DroEre_CAF1 7321 102 - 1
GUUGGCGUAGGUAAAGGUUCCUCCGCUGAUGCCAUUGCUCACCGCAGUCAUGGCUGUCGCAGUUGUGUUAUUGGGGGCA------------GAGUUGGCGGCCGAAAAUGCCUG
((..(((.(((........))).)))..))((((((((((.(((....((..((((...))))..))....))))))))------------)...))))(((.......))).. ( -37.70)
>DroYak_CAF1 7314 99 - 1
G---CCGUAGGUAAAGGUUCCUCCGCUGAUGCCAUUGUUCACCGCCGUCAUGGCUGUCCCAGUUGUGUUAUUGGCGGUG------------GAGUUGACAGCCGGAAAGGCCUG
(---((...)))..(((((..(((((((....((...((((((((((.((..((((...))))..))....))))))))------------))..)).))).))))..))))). ( -38.60)
>DroAna_CAF1 7999 105 - 1
GUUGGCAUAGGUAAAGCUUCCGCCGUUGAUUCCAUUGGUGACGGCCGUCAUCGUGGUGGCGGCUGGGU---UGGCGGCAGAA------ACUGGAUUUCCAGCAGAAAAUGCCUG
...(((((.........(((.(((((..((((....(....)(((((((((....)))))))))))))---..))))).)))------.((((....))))......))))).. ( -46.10)
>consensus
GUUGGCGUAGGUAAAGGUGCCUCCGCUGAUGCCAUUGUUCACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCG____________GAAUUGGCGGACGGAAAUGCCUG
...(((((.((........))(((((((((((....))...((((((.((..((((...))))..))....))))))................))))))))).....))))).. (-22.58 = -23.62 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:35 2006