Locus 1468

Sequence ID 2R_DroMel_CAF1
Location 5,607,309 – 5,607,399
Length 90
Max. P 0.847822
window2501

overview

Window 1

Location 5,607,309 – 5,607,399
Length 90
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.68
Mean single sequence MFE -24.65
Consensus MFE -17.08
Energy contribution -18.37
Covariance contribution 1.28
Combinations/Pair 1.27
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value 0.78
SVM RNA-class probability 0.847822
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5607309 90 - 20766785
ACUGAAUCCAAAUUGUAUGUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGUCAG
.(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.30)
>DroPse_CAF1 3696 104 - 1
----AAGUCGAUGUGAUUAUACAUACAUAUACAAUAUUUUUGCAAUUAGCAUAGGUUACUAUGGUACUCUAGGUUGCCCUCUGCCACCGCCUAUGGAGUGGUAGACAG
----..((..(((((........)))))..)).........(((((((.(((((....))))).))......)))))..((((((((..((...)).))))))))... ( -22.90)
>DroSec_CAF1 4872 90 - 1
ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGAAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCAGGGCGGUCAG
.(((((.......((((((((....))))))))....))------------)))((..(((((....)))))...)-)---..(((((((((.--...)))))).))) ( -25.50)
>DroSim_CAF1 3716 90 - 1
ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGUCAG
.(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.30)
>DroEre_CAF1 5139 90 - 1
ACUAAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUU--GCGAGGCGGACAC
......(((....((((((((....))))))))((((..------------.((((..((((......))))..((-(---....))))))).--..)))).)))... ( -23.70)
>DroYak_CAF1 5135 90 - 1
ACUAAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGACAG
.(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.20)
>consensus
ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU____________UAGGUAUCUGGUAAACUCUAGUUGG_C___UGCUGCCGCCUC__GCGAGGCGGACAG
.......((((..((((((((....)))))))).........................((((......)))))))).......((((((((((....))))))).))) (-17.08 = -18.37 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:34 2006