| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,596,488 – 5,596,587 |
| Length | 99 |
| Max. P | 0.506065 |
| Location | 5,596,488 – 5,596,587 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -25.01 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5596488 99 + 20766785 ACAAGAAAAUGUUGAGGUGGCAU-UUUCAUGCUAAGCUUGAUUGAUCAAAUAAUCAAUUAGUUGUACCUGGUGUUUUCUAGUGUAUACUCCUUGACAACA--------------- .........(((..(((((((((-....))))))((((.(((((((......)))))))))))((((((((......)))).))))...)))..)))...--------------- ( -26.30) >DroSec_CAF1 5456 98 + 1 ACAAGAAAACGUUGAGGUGGCAA-UUUUAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAUUUGUGCCUGGUGU-GCCUAGUGUACUUACCUUGACAACA--------------- ..........((..(((((((((-((....((...))..))))))..................((((((((...-..)))).)))).)))))..))....--------------- ( -24.00) >DroSim_CAF1 5533 99 + 1 ACAAGAAAACGUUGAGGUGGCAU-UUCUAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUGUGCCUGGUGUUGCCUAGUGUACUUACCUUGACAACA--------------- ..........((..(((((((((-....))))).((((((((((......))))))...))))((((((((......)))).))))..))))..))....--------------- ( -25.30) >DroEre_CAF1 5700 115 + 1 ACAAGAAAAUAUUGAGGUGUCCUUUUUCCUGAUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUCAUACCUUGUGUUGCCUAGUGAAUGUUCCUUGAAAACAAGGAACAUUAACCAG ...((..(((((.((((((..........((((.((.(((((((......))))))))).)))))))))))))))..)).((.(((((((((((....))))))))))).))... ( -26.90) >DroYak_CAF1 5616 99 + 1 ACAAGAAAAUAUUGAGGUGGCAU-UUUCACGAUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUAUACCUUGUGUUGCCUAGUAAACUUUUCUUGAAAACA--------------- .((((((((((((.(((..((((-.............(((((((......))))))).............))))..)))))))...))))))))......--------------- ( -22.57) >consensus ACAAGAAAAUGUUGAGGUGGCAU_UUUCAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUGUACCUGGUGUUGCCUAGUGUACUUUCCUUGACAACA_______________ .((((.........(((((((((..............(((((((......))))))).............)))))))))...........))))..................... (-11.78 = -12.62 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006