Locus 1464

Sequence ID 2R_DroMel_CAF1
Location 5,590,849 – 5,590,939
Length 90
Max. P 0.551713
window2495

overview

Window 5

Location 5,590,849 – 5,590,939
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 78.03
Mean single sequence MFE -36.87
Consensus MFE -24.45
Energy contribution -23.43
Covariance contribution -1.02
Combinations/Pair 1.46
Mean z-score -1.18
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.551713
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5590849 90 - 20766785
GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGCUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA
......((..((((((((..((.(((..(((..(((.((..(.....)..)))))...))).))).))...))))))))..))....... ( -38.10)
>DroPse_CAF1 26 87 - 1
GGAUGAGCUGUCGCGUCUUACGCUGGGCUUUUGCGGCGCUCGAUUGCUUGUCCGGGAAGCCGCC---GCCGGCACUCGUUGGUGUUAUAA
(((..(((.((((((.....))).((((.........))))))).)))..)))((....))..(---((((((....)))))))...... ( -33.80)
>DroEre_CAF1 26 90 - 1
GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGGUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUGA
.(((((((((((((.(((........))).)))))).)))))))(((((.......))))).(((((((..((....))..)))..)))) ( -39.20)
>DroYak_CAF1 26 90 - 1
GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGCUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA
......((..((((((((..((.(((..(((..(((.((..(.....)..)))))...))).))).))...))))))))..))....... ( -38.10)
>DroAna_CAF1 26 87 - 1
GGAUGAGCUGGCGGGUACGUCGCUGGGCGGUCGCCGUAAUGGCCGGCUUGGCCGGAAAGUCAUCCACG---GUGCUCGUUGGCGUAAUGA
......((..((((((((...((..((((((((......))))).)))..)).(((......)))...---))))))))..))....... ( -38.20)
>DroPer_CAF1 361 87 - 1
GGAUGAGCUGUCGCGUCUUACGCUGGGCUUUUGCGGCGCUCGAUUGCUUGUCCGGGAAGCCGCC---GCCGGCACUCGUUGGUGUUAUAA
(((..(((.((((((.....))).((((.........))))))).)))..)))((....))..(---((((((....)))))))...... ( -33.80)
>consensus
GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGGCUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA
......((((((((((((...((((((((.....))).((((((.....))))))....))).....))..))))))))))))....... (-24.45 = -23.43 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:28 2006