| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,581,813 – 5,581,923 |
| Length | 110 |
| Max. P | 0.829214 |
| Location | 5,581,813 – 5,581,923 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.34 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -24.02 |
| Energy contribution | -24.83 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5581813 110 + 20766785 UCUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUUGAUCAUCCGUAAGAAGCUCUCAAAACU-GCGU--CCCUUACUGGUUUAUUAAUA ....(((((...(((((.....(((((.....)))))))))).))))).(((((....)))))..(((((((..((.(........-).))--..))))).)).......... ( -30.90) >DroSec_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU-UCGU--CUCUUACCGGUUUACUAAUA .....((((((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).)))....-....--.................... ( -31.80) >DroSim_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU-UCCU--CCCUUACCGGCUUAUUAAUA .....((((((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).)))....-....--.................... ( -31.80) >DroEre_CAF1 81 113 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCAUACGACUCAUGCCACUCUUAGCGGUUAAUUAUUA ........(((((((((....((((((.....)))))).))..((((((.....))))))...........)))))))...........(((.(.....).)))......... ( -32.70) >DroYak_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCACGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCAUAACACU-GUGC--CUCCUACCGGUUAAUUAUUU ........(((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).((((.(.-(((.--....))).)))))....... ( -32.60) >DroMoj_CAF1 81 101 + 1 UUUAUUUGGGUCUGCGCUACUUCUGGCCCCACGCCCGAUGCAAUCAGGAGGUGAUUCUUGAUCAUCCGUAAGCACU----GAAUCU-UCCA--AUCA-----UUUUAUCUAUA ...(((..((..((((........(((.....))).((((..((((((((....))))))))))))))))..).).----.)))..-....--....-----........... ( -20.80) >consensus UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU_UCGU__CUCUUACCGGUUUAUUAAUA (((((((((((.(((((.....(((((.....))))))))))))).(((((((......)))).))).))))))))..................................... (-24.02 = -24.83 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:26 2006